Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01856 ATGGACTCAGGGTTCTGCGCCGGCCATCTCGCGGAGCTCTTAGGTCCCAACACCACCAACGCCACCGGCGCTGCAAATTTCATCTGCGACCAATTTACCACCATCACCAACAACTTCTCCGACACCAAAAACGCCCTCGATAACACCTACCTCCTCTTCTCCGCGTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTTTGCGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCTGGAGGCCTCTTCTACTACCTCTTCGGCTACGCATTTGCCTTCGGATCCCCTTCCAATGGCTTCATCGGCCGCCATAACTTTGGCCTCAGTTCCTTCCCCACCTCCACCGCTGATTACAGTTTCTTCCTCTACCAGTGGGCGTTTGCGATTGCCGCCGCTGGGATTACCAGTGGATCTATTGCTGAGCGGACTCAATTCGTCGCTTATTTGATTTATTCCTCTGTTTTGACTGGATTTGTTTATCCTGTGGTTTCTCACTGGTTCTGGTCCCCTGATGGTTGGGCTGGGGCTATGAAATCGGGAGGCGGATTGTTGTTCGGATCGGGAGTTATCGATTTCGCTGGCTCCGGCGTCGTCCATATGGTTGGGGGAATTGCAGGTCTCTGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTTGACCACACGGGCCAGTCCGTAGCTATGCGAGGGCACAGCGCCTCTTTAGTCGTTCTCGGGACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCGTACACCACCGGGAACTTCTACGGCCAATGGAGTGCCGTCGGACGGACAGCGGTTACCACCACACTCGCCGGATGCACGGCGGCACTCACCACACTCTTCGGGAAGAGATTCCTCTCAGGACACTGGAACGTGACGGACGTTTGCAACGGACTCCTCGGCGGATTCGCCGCCATCACAGCCGGCTGCTCCGTCGTCGAACCGTGGGCGTCAATCATCTGCGGCTTCGTAGCCGCCCTCGTACTAATAACCTGCAACCACATCGCCGAGAAGGCGAAGTACGATGATCCGCTAGAAGCCGCCCAGCTTCACGGCGGCTGCGGCGCGTGGGGAGTGATATTCACAGCGCTATTCGCAACCAAGGAGTACGTGGCGGAGGTGTACGGCGGATCTCAACGACCTTACGGACTTCTAATGGGCGGCGGCGGGAGGTTACTTGCAGCGCATTTGATACAGATTGTGGTGATTGTAGGGTGGGTGAGCGGGACGATGGGGCCATTGTTCTTTGTTCTTCACAAACTGAAGCTTCTGAGAATCTCTAGTGAAGATGAAATGGCGGGGATGGATCTGACCCGCCATGGGGGATTTGCTTACACATATCATGATGAAGATGAAGCGCAGAAAAGGGGAATTCAGTTGAGCAGAGTGGAACCAAAATCTGCAACCCCCATTGTACACTAA 1500 55.73 MDSGFCAGHLAELLGPNTTNATGAANFICDQFTTITNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLSSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGAMKSGGGLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHTGQSVAMRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWASIICGFVAALVLITCNHIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVAEVYGGSQRPYGLLMGGGGRLLAAHLIQIVVIVGWVSGTMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYTYHDEDEAQKRGIQLSRVEPKSATPIVH 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13191687 13193186 + CmaCh14G018560.1 Cma14g01856 308839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01856 499 SUPERFAMILY Ammonium transporter 44 452 - -
Cma14g01856 499 PANTHER AMMONIUM TRANSPORTER 7 494 - -
Cma14g01856 499 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 7 494 - -
Cma14g01856 499 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cma14g01856 499 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cma14g01856 499 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Cma14g01856 499 TIGRFAM amt: ammonium transporter 47 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00980 Cma-Chr12:7754385 Cma14g01856 Cma-Chr14:13191687 0 dispersed
Cma14g01856 Cma-Chr14:13191687 Cma02g01713 Cma-Chr2:9641402 0 wgd
Cma14g01856 Cma-Chr14:13191687 Cma08g01041 Cma-Chr8:6522942 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01856 K03320 - csv:101208366 905.975