Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01860 ATGCATTCCATTGCCAATCTCCGCTCCGTTCCTCTGTCACTTTCCGTCGTTGCTTCATCCTCACCTTCTTCTCCAAATGGAAAATCGGAACCGAAGCAGGTGAAACTCAGGGAAGATTGGAGGCGACGCTCCCGACCGATTCCTCCTGGAGGCACCTACCCTGCCAAAGAACATTGCAGTCGATGCGGCTTGTGTGATACTTATTACATTGCTCACGTGAAGGATGCGTGTGCTTTCTTGGGCGATGGCATGTCTAGAGTGGAAGAATTGGAACCTGTTGTTCACGGTAGAGGGAGGAAGACAGATACGCTGGATGAGACGTATTTTGGGGTTCATGAGAAGCTATTATATGCTCGTAAGATTAAACCAGTGGAAGGAGCTCAATGGACGGGGATAGTAACAACCATAGCAATTGAAATGCTTAAGTCAGGCATGGTCGAGGCTGTTATTTGTGTACAGAGTGATCCAGAGGACAGATTCAGTCCAAGGCCTATTTTAGCAAGGACACCAGATGAAATCCTAGCAGCCAGAGGAGTAAAGCCAACTTTGTCTCCCAACTTGAATACCCTTGCTCTAGTTGAGGCTGCAGGAGTCAAACGTCTTCTTTTTTGTGGTGTGGGCTGTCAAGTGCAAGCATTAAGATCTGTGGAGCAGCATTTAAATCTGGAGAAGCTTTATGTACTGGGCACTAATTGTGTGGATAATGGAACTCGAGAAGGACTAGATAAATTTCTCAAGGCTGCAAGTACAGAACCAGAGACGGTTCTTCACTACGAGTTCATGCAAGATTACAAGGTTCATCTAAAACATTTGGATGGTCATATTGAAGAGGTTCCCTATTTCTGTCTACCTGCAAATGACTTGGTTGATGTTATTGCACCATCTTGCTACAGTTGTTTTGATTATACAAATGCTTTAGCGGATCTGGTTGTTGGATACATGGGTGTGCCAAAATATTCTGGAGTCAGCATGACCCAACATCCACAGTATATTACTGTTAGAAATGAGCGTGGTAGAGAGATGCTGGGTTTAGTGGAAAAGTACTTGGAAATTACACCAACCATTAGCGAGGGTAATCGAAGACCTTTAGTTATGGAGACTGTGAAGGCAGATGACGATGCTAAGCTTGGGAAAGGTCCTTCACAGCCTGCTCCAAAATTTATTGGGAACATCATTGCGTTTTTTCTGAACTTGATTGGCCCTAAAGGTCTGGAATTTGCTCGTTATTCACTGGATTACCATACCATCCGGAACCATTTATATGTCACCCGAAAATGGGGAAAACAAAGAGCTGATAAGCATGAACCTACATATGCTAAAAAGTTAGTGGATTTGTACAACCAGAAGGGTGAAATTGATCACATACTTTCCAACTCAAAGTAA 1383 43.89 MHSIANLRSVPLSLSVVASSSPSSPNGKSEPKQVKLREDWRRRSRPIPPGGTYPAKEHCSRCGLCDTYYIAHVKDACAFLGDGMSRVEELEPVVHGRGRKTDTLDETYFGVHEKLLYARKIKPVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPEDRFSPRPILARTPDEILAARGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYSGVSMTQHPQYITVRNERGREMLGLVEKYLEITPTISEGNRRPLVMETVKADDDAKLGKGPSQPAPKFIGNIIAFFLNLIGPKGLEFARYSLDYHTIRNHLYVTRKWGKQRADKHEPTYAKKLVDLYNQKGEIDHILSNSK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13206417 13212782 - CmaCh14G018600.1 Cma14g01860 308843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01860 460 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 117 190 IPR007516 -
Cma14g01860 460 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 30 451 IPR045220 GO:0016491
Cma14g01860 460 MobiDBLite consensus disorder prediction 17 52 - -
Cma14g01860 460 MobiDBLite consensus disorder prediction 31 45 - -
Cma14g01860 460 SUPERFAMILY Prismane protein-like 77 180 IPR011254 GO:0003824|GO:0016491
Cma14g01860 460 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 199 353 IPR007525 -
Cma14g01860 460 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 30 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01860 K18010 HCAR; 7-hydroxymethyl chlorophyll a reductase [EC:1.17.7.2] - csv:101208123 873.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01860 Cma-Chr14:13206417 Cma06g01280 Cma-Chr6:8503258 5.37E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g813 . . Bda03g01105 . Bpe04g00973 . Bma04g01031 . . . . Cma14g01860 . Car14g01665 . . Cpe03g01557 Bhi01g00032 . . . . . . . . . . . . . Cone14ag0198 . . . Lsi05g01788 . . Cme06g00433 . . . . . . . . . . Cmo14g01904 . . . . . . . . . . . . . Cla05g00391 Cam05g0425 Cec05g0430 Cco05g0430 Clacu05g0421 Cmu05g0403 Cre05g0465 . Csa03g01148 Chy06g00413 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011151 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01860 Cma_Chr14 FPKM 2.838033 2.201777 22.60165 23.025703 55.90963 58.972664 55.389168 12.177546 13.669097 13.425308