Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01861 ATGGGTGAAGTGAAGCTGTATGGGAACTGGTCGAGTCCTTTCACTTACAGAGTCATATGGGCTTTAGCCATCAAAGCCGTTCCCTACGAATACGTAGAAGAAGACCTCTCCAACAAAAGCCCTTCGCTCCTACAGTACAATCCCATCCACAAGAAGGTCCCTGTCCTCGTCCATGGCGGAAAACCCATCTGTGAATCCACTCTCATCCTCCAATACATCGACGAGACATGGCCGGAGAATCCCCTGTTCCCAGCTGATCCCCTCGATCGAGCCGCTGCTCGATTTTGGATTCGATTCGCCGAGGATAAGGTCCCGGTGACGTGGAGAATGTTCTGCTCCGACGGGGAGGAACACTTGAAGGCGAAGCGGGAGAGCTTGGAGATGCTGCAGATCGTGGAAGAGGGAGGCATCGGCGAGGGGAAGTTCTTCGGCGGAGAGACGATCGGGATAGTGGATTTGGTGTACGGAATATTTGGAGATTGGTTGGGAGTGATTGAAGAGGTGATCGGCGAGAAACTGGTGGAAGCCGATTCATTTCCTCGGCTGCACGCTTGGATCAGAGCTTTCGTGGAAGCTCCGACGATTCGAGAGAACCGTCCCAATCGAGATCGGATGGTCGTCACTTTCAAGGGCTTGAGAGAGCGGCTTCTGAAATCGACATCCGAGTAA 669 53.21 MGEVKLYGNWSSPFTYRVIWALAIKAVPYEYVEEDLSNKSPSLLQYNPIHKKVPVLVHGGKPICESTLILQYIDETWPENPLFPADPLDRAAARFWIRFAEDKVPVTWRMFCSDGEEHLKAKRESLEMLQIVEEGGIGEGKFFGGETIGIVDLVYGIFGDWLGVIEEVIGEKLVEADSFPRLHAWIRAFVEAPTIRENRPNRDRMVVTFKGLRERLLKSTSE 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13213235 13214322 - CmaCh14G018610.1 Cma14g01861 308844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01861 222 CDD GST_N_Tau 4 77 - -
Cma14g01861 222 SUPERFAMILY Thioredoxin-like 4 103 IPR036249 -
Cma14g01861 222 SUPERFAMILY GST C-terminal domain-like 75 215 IPR036282 -
Cma14g01861 222 PRINTS Omega-class glutathione S-transferase signature 2 17 IPR005442 GO:0004364|GO:0005737
Cma14g01861 222 PRINTS Omega-class glutathione S-transferase signature 77 91 IPR005442 GO:0004364|GO:0005737
Cma14g01861 222 PRINTS Omega-class glutathione S-transferase signature 142 161 IPR005442 GO:0004364|GO:0005737
Cma14g01861 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 215 IPR045073 -
Cma14g01861 222 Pfam Glutathione S-transferase, C-terminal domain 116 193 IPR004046 -
Cma14g01861 222 Gene3D - 86 220 - -
Cma14g01861 222 SFLD Glutathione Transferase (cytosolic) 1 219 IPR040079 -
Cma14g01861 222 SFLD Main.3: Omega- and Tau-like 1 219 IPR045073 -
Cma14g01861 222 CDD GST_C_Tau 87 212 IPR045074 GO:0004364|GO:0006749
Cma14g01861 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 209 IPR010987 -
Cma14g01861 222 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
Cma14g01861 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cma14g01861 222 PANTHER GLUTATHIONE S-TRANSFERASE 1 215 - -
Cma14g01861 222 Gene3D Glutaredoxin 1 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01861 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - pvy:116142227 299.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01155 Cma-Chr6:7777316 Cma14g01861 Cma-Chr14:13213235 8.87E-71 dispersed
Cma14g01861 Cma-Chr14:13213235 Cma14g01961 Cma-Chr14:13801828 2.52E-29 dispersed
Cma14g01861 Cma-Chr14:13213235 Cma14g01862 Cma-Chr14:13214607 1.72E-91 tandem
Cma14g01861 Cma-Chr14:13213235 Cma06g01277 Cma-Chr6:8499592 8.61E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01861 Cma_Chr14 FPKM 27.949179 28.624556 0.0 0.0 5.695056 4.518468 3.157625 0.533693 0.442824 0.25821