Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01862 ATGGTGCCACTGCCCGGCCAGAATTCCGCCGGGCTTCCTTCAACTGCCAATCCCGGCGGCCGGAATTCAACCAGTTTGACTCCCAATGACATGAATGAGAGTGTTGAGAGGATCCCTGTTCTTCGGGGAATGCTTCTTGCGGAAGGGGAAGAAGATAGGGCAAAGGTGAGAAAAGCGAGCTTGGAAGTGCTGCAGACGCTGGAATTGCCGGTGTTCCAAGAGGTCGTCGGTATAAAGGTCCTCGAACCAGATACATTCCCTCGCACATTCCCTCGCCTCCATGCTTGGGCGGAGAACTTCCGGCAAGCCGCCGTCATCAGAGACAGTCTGCCCGATCACGCCCAGATGTCAACGCGCGAGCTTCCTGGCCAAGAAAACTCGCCAATTCATCGCGGCATTATAAAACGAAAGGTTGGTAATGATCCCAAAGCCATAACAATGGCGGATCAGGTGAAGCTTCATGGAAATTGGTTGAGTCCATTCAGTAGCAGAGTCATCTGGGCTCTAAAGCTGAAGGGAATCCCGTATGAATACGTAGAAGAAAATGTTGCCGACAAAAGTGCTCTGCTTTTGCAGTACAATCCTGTCTACAAGAAGATTCCGGTGCTCGTCCACGCCGGAAAGCCGATCTGCGAGTCCATGATCATCCTCGACTACATCGACGAGACTTGGCCGGTGAACCCACTCCTGCCTTCCGATCCGTTCCATAGAGCCACGGCTCGCTTCTGGATCAAATTTATAGAGGATAAGAGCCTGGTGCTTTGGGGAGTGTTTATGGCGAATGGGGAAGACGATAGGGAAAAGGCGAGAAAGGCGACATTGGAAGTACTGCAGACGTTGGAAGAACAGGCGTTCGGGGACGAGAAATTCTTCGGTGGAGATGAGATTAACATGGTGGATTTAGCATACGGGATGCTAGCGCGGTGGATGCCAGTGATCGAAGAGGTTGTGGGTGTAAAACTCCTCGATCCCGACATGTTCCCTCGCCTCCATGCTTGGGCAGAGAACTTCCGGCAAGCCGCCGTCATCAGAGACAATCTGCCTGATCACGCTCAGATGGTGCCCTTGTTCAAGATCCGGCGAGAGCAGCTACTCCAAATTGCAAGGAAATGA 1113 52.56 MVPLPGQNSAGLPSTANPGGRNSTSLTPNDMNESVERIPVLRGMLLAEGEEDRAKVRKASLEVLQTLELPVFQEVVGIKVLEPDTFPRTFPRLHAWAENFRQAAVIRDSLPDHAQMSTRELPGQENSPIHRGIIKRKVGNDPKAITMADQVKLHGNWLSPFSSRVIWALKLKGIPYEYVEENVADKSALLLQYNPVYKKIPVLVHAGKPICESMIILDYIDETWPVNPLLPSDPFHRATARFWIKFIEDKSLVLWGVFMANGEDDREKARKATLEVLQTLEEQAFGDEKFFGGDEINMVDLAYGMLARWMPVIEEVVGVKLLDPDMFPRLHAWAENFRQAAVIRDNLPDHAQMVPLFKIRREQLLQIARK 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13214607 13217686 - CmaCh14G018620.1 Cma14g01862 308845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01862 370 Gene3D - 68 121 - -
Cma14g01862 370 Gene3D - 233 368 - -
Cma14g01862 370 SUPERFAMILY GST C-terminal domain-like 222 362 IPR036282 -
Cma14g01862 370 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 71 118 IPR045073 -
Cma14g01862 370 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 149 362 IPR045073 -
Cma14g01862 370 MobiDBLite consensus disorder prediction 8 32 - -
Cma14g01862 370 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 233 357 IPR010987 -
Cma14g01862 370 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 149 228 IPR004045 -
Cma14g01862 370 Pfam Glutathione S-transferase, N-terminal domain 150 222 IPR004045 -
Cma14g01862 370 Pfam Glutathione S-transferase, C-terminal domain 260 337 IPR004046 -
Cma14g01862 370 CDD GST_N_Tau 151 224 - -
Cma14g01862 370 Gene3D Glutaredoxin 145 232 - -
Cma14g01862 370 SFLD Glutathione Transferase (cytosolic) 147 366 IPR040079 -
Cma14g01862 370 SUPERFAMILY Thioredoxin-like 150 249 IPR036249 -
Cma14g01862 370 CDD GST_C_Tau 234 360 IPR045074 GO:0004364|GO:0006749
Cma14g01862 370 SFLD Main.3: Omega- and Tau-like 147 366 IPR045073 -
Cma14g01862 370 PANTHER GLUTATHIONE S-TRANSFERASE 71 118 - -
Cma14g01862 370 PANTHER GLUTATHIONE S-TRANSFERASE 149 362 - -
Cma14g01862 370 SUPERFAMILY GST C-terminal domain-like 44 116 IPR036282 -
Cma14g01862 370 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01862 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01277 Cma-Chr6:8499592 Cma14g01862 Cma-Chr14:13214607 8.35E-07 dispersed
Cma06g01278 Cma-Chr6:8501349 Cma14g01862 Cma-Chr14:13214607 7.53E-11 dispersed
Cma14g01862 Cma-Chr14:13214607 Cma03g00383 Cma-Chr3:4364137 9.03E-62 dispersed
Cma14g01861 Cma-Chr14:13213235 Cma14g01862 Cma-Chr14:13214607 1.72E-91 tandem
Cma14g01862 Cma-Chr14:13214607 Cma14g01863 Cma-Chr14:13218401 5.90E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g826 . . . . . . . . . . . Cma14g01862 . . . Cpe08g00370 Cpe03g01560 Bhi01g00028 . . . . . . . . . . . . . . . . . Lsi05g01794 . . Cme06g00428 . . . . . . . . . Cmo06g01285 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01862 Cma_Chr14 FPKM 21.072777 20.659573 1.706821 2.298626 19.060186 20.119083 16.726282 0.0 0.256056 0.141216