Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g01872 | ATGAGACACGTGGGGAAGACCGTCCGCACGTGTGGCGGGAGTACAGTGAAAGTCTATAAAGAAAAGCCATTTCGTTGGAAGCTTACTCCGACTCCATTACTGCCTTCTCCAACTTCTTCTTCTTCTTCTTGTTCTTCGTCTTTTTCATTCTCATTTCTGAAAATTTGTGTCTGCATTTGGACGCAAAAGGAATTGGAGTTGGAGGAACGACCAATGGCAGAATCTGGAGGGTGGATTCGTTTGTTTCTTCTCGTGGTGTTCTTGTTGTTCGTCGGAGCAATTGCCAGAGTTCCCAAAGACATTCCTGAAATTGATAATGAGGCAACCGGGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAGGAGCCTGAGGCTGAGACTCCCGTCAATAAGCATGCCGTGGACAACCCAGACGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGAGAGCTTGGTTTCTTCTCGTGTGGAACCGGCAATCCTATTGATGACTGCTGGCGCTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTAGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATTGGTGGTCGTGATGGTCGATTCTACGTCATCACTGACTCAGGCGACGATGACCCTGTCAACCCAAGGCCTGGCACTTTGCGACATGCCGTTATACAGGACGAACCTCTCTGGATCGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTTATCATGAACAGTTTCAAGACAATTGATGCCCGTGGGTCCAATGTGCATATTGCTAATGGAGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGTTCACCCAATCACGTTGGGTGGAGAACAATTGCTGATGGGGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATTGATCACAATTCCCTCTCTAACTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACCGCAATTACCATCACCAACAATTACTTCACCCATCACAATGAGGTGATGTTATTGGGGCATAGTGATTCTTACGTTAGAGATAAACAGATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGACCAAGAGAGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAAGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCAAAATCTTCATCCATGGTTGCTACCATAACAGCCACCGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCCTGCTAG | 1440 | 47.99 | MRHVGKTVRTCGGSTVKVYKEKPFRWKLTPTPLLPSPTSSSSSCSSSFSFSFLKICVCIWTQKELELEERPMAESGGWIRLFLLVVFLLFVGAIARVPKDIPEIDNEATGKLQSSSNSSMAVRLEEPEAETPVNKHAVDNPDEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVITDSGDDDPVNPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGSNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTIADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVATITATAGALSCRRGHPC | 479 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 13264747 | 13269813 | - | CmaCh14G018720.1 | Cma14g01872 | 308855 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g01872 | 479 | SUPERFAMILY | Pectin lyase-like | 146 | 474 | IPR011050 | - | |
| Cma14g01872 | 479 | SMART | amb_all | 244 | 442 | IPR002022 | - | |
| Cma14g01872 | 479 | Pfam | Pectate lyase | 255 | 412 | IPR002022 | - | |
| Cma14g01872 | 479 | PANTHER | PECTATE LYASE | 83 | 407 | - | - | |
| Cma14g01872 | 479 | PANTHER | PECTATE LYASE | 407 | 476 | - | - | |
| Cma14g01872 | 479 | PANTHER | PECTATE LYASE 18-RELATED | 407 | 476 | IPR045032 | GO:0030570 | |
| Cma14g01872 | 479 | PANTHER | PECTATE LYASE 18-RELATED | 83 | 407 | IPR045032 | GO:0030570 | |
| Cma14g01872 | 479 | PRINTS | Pollen allergen Amb family signature | 192 | 209 | IPR018082 | - | |
| Cma14g01872 | 479 | PRINTS | Pollen allergen Amb family signature | 216 | 241 | IPR018082 | - | |
| Cma14g01872 | 479 | PRINTS | Pollen allergen Amb family signature | 252 | 268 | IPR018082 | - | |
| Cma14g01872 | 479 | PRINTS | Pollen allergen Amb family signature | 396 | 415 | IPR018082 | - | |
| Cma14g01872 | 479 | PRINTS | Pollen allergen Amb family signature | 316 | 337 | IPR018082 | - | |
| Cma14g01872 | 479 | Gene3D | - | 169 | 472 | IPR012334 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma14g01872 | Cma17g00116 | CCT | |
| Cma08g01035 | Cma14g01872 | CCT | |
| Cma14g01872 | Cma17g00116 | ECH | |
| Cma08g01035 | Cma14g01872 | ECH | |
| Cma06g01265 | Cma14g01872 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma14g01872 | Cma-Chr14:13264747 | Cma13g00770 | Cma-Chr13:6648875 | 0 | dispersed | |
| Cma14g01872 | Cma-Chr14:13264747 | Cma17g00116 | Cma-Chr17:574066 | 0 | wgd | |
| Cma14g01872 | Cma-Chr14:13264747 | Cma19g00136 | Cma-Chr19:853549 | 0 | wgd | |
| Cma14g01872 | Cma-Chr14:13264747 | Cma02g01698 | Cma-Chr2:9553186 | 0 | wgd | |
| Cma14g01872 | Cma-Chr14:13264747 | Cma06g01265 | Cma-Chr6:8417871 | 0 | wgd | |
| Cma14g01872 | Cma-Chr14:13264747 | Cma08g01035 | Cma-Chr8:6481057 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g01872 | K01728 | - | csv:101218188 | 737.643 |