Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01873 ATGAAATGGATATGCATTGCCCATTTTTTGCTGTTAATTAGGTTGATTGCGGCTGATCATCGACGAATCCCCACCACCCTTGATGGGCCATTTCTGCCAGTTACTCGTCGATTTGATCCGTCTTTGAGGCGTGGAAGTGATGATTTGCCCTTGGATCATCCCAGGCTACGGAAGAATGTTTCATCTAACTTCCCTGAACAGATAGCGCTTGCGATTTCCACTCCGAGTTCCATGTGGGTCTCTTGGGTTACGGGGGATGCTCAGATTGGCCAAAATGTGACTGCGCTGGATCCCTCGTCTATTGCCAGTGAAGTTTGGTATGGAAAAGAAAGTGAAAAGTACACGAGTGTGAGAAGAGGGTTTTCGACTGTTTACAGTCAGCTATATCCATTTGAAGGGCTTCTTAATTACACTTCTGGCATCGTTCATCATGTCAAAATCGATGGCCTCGAGCCCGAAACCAGGTATTATTACCGGTGTGGAGATAGCTCTATTTCAGCTTTGAGTAAAGAGCACGTCTTCAAGACTTTACCGGTGCCGAGCAAGAGTTCATATCCTCATAGAATAGCCATTGTTGGAGACTTGGGACTTACAAGCAATTCAACGACAACAGTTGATCATATGGTTAAGAATGATCCTTCTCTGATCTTGATGCTCGGAGATTTAACTTATGCGAACCAATACCGCACAACGGGTGGCAAAGGAGCTTCATGCTTTTCATGTGCATTTCCAGATGCTCCCATCAGAGAGACATATCAACCCCGTTGGGACGGGTGGGGCAGGTTTATGGAGCCACTGACATCACGAGTTCCAATGATGGTTATTGAGGGTAACCATGAAATTGAGCCCCAAGTTTCTGGGATCACTTTTAAATCATATTTGACAAGATTTGCAGTGCCCTCTGCTGAAAGTGGCTCGAATAGTAGCTTCTACTATTCATTCAATGCTGGTGGAGTTCATTTTCTTATGTTGGGAGCATATGTTGATTACAACGCTACTGGTGCTCAGTACGCTTGGCTGAAAGAAGATCTGAGTAAAGTGGATCGTAGCGTGACCCCTTGGTTAGTAGCTGCCTGGCATCCTCCATGGTACAATAGCTATGCTTCTCATTACCAGGAATTTGAATGTATGCGCCAAGAAATGGAACACCTTCTTTATGAGCATCGTGTGGATGTCGTTTTTTCTGGTCATGTACATGCCTACGAGCGCATGAACCGGGTGTACAACTATACGCTGGACCCTTGTGGGCCAGTTTACATAACAGTTGGAGATGGTGGAAACATTGAGAAGGTTGATGTGGACCATGCTGATGACCCTGGAAAGTGTCCTTCAGCTGGTGATAACATTCCTGAAATTGGAGGAGTTTGTCGTTTGAACTATTCTTCAGGTCCAGCAGAAGGGAAGTTTTGTTGGAACACTCAACCTGAGTGGAGTGCATTTAGAGAAAGCAGCTTTGGTCATGGAACGCTTGAGGTAACAAATTCAACGCACGCTTTGTGGACTTGGCATCGGAATCAAGATATGTACAAGGACGATATCCATGGAGATCAAATATATATCGTTCGACAACCCCGGGCGTGCTCTCCGACTGCCAAGGTTGCTTCTGTCTCAATACTCTCTTGA 1623 45.53 MKWICIAHFLLLIRLIAADHRRIPTTLDGPFLPVTRRFDPSLRRGSDDLPLDHPRLRKNVSSNFPEQIALAISTPSSMWVSWVTGDAQIGQNVTALDPSSIASEVWYGKESEKYTSVRRGFSTVYSQLYPFEGLLNYTSGIVHHVKIDGLEPETRYYYRCGDSSISALSKEHVFKTLPVPSKSSYPHRIAIVGDLGLTSNSTTTVDHMVKNDPSLILMLGDLTYANQYRTTGGKGASCFSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQVSGITFKSYLTRFAVPSAESGSNSSFYYSFNAGGVHFLMLGAYVDYNATGAQYAWLKEDLSKVDRSVTPWLVAAWHPPWYNSYASHYQEFECMRQEMEHLLYEHRVDVVFSGHVHAYERMNRVYNYTLDPCGPVYITVGDGGNIEKVDVDHADDPGKCPSAGDNIPEIGGVCRLNYSSGPAEGKFCWNTQPEWSAFRESSFGHGTLEVTNSTHALWTWHRNQDMYKDDIHGDQIYIVRQPRACSPTAKVASVSILS 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13276276 13280847 + CmaCh14G018730.1 Cma14g01873 308856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01873 540 CDD MPP_PAPs 183 522 IPR041792 -
Cma14g01873 540 PANTHER ACID PHOSPHATASE RELATED 13 530 IPR039331 GO:0003993
Cma14g01873 540 SUPERFAMILY Metallo-dependent phosphatases 186 507 IPR029052 -
Cma14g01873 540 Pfam Iron/zinc purple acid phosphatase-like protein C 466 508 IPR025733 -
Cma14g01873 540 Gene3D - 452 530 IPR029052 -
Cma14g01873 540 Gene3D - 183 448 IPR029052 -
Cma14g01873 540 Pfam Purple acid Phosphatase, N-terminal domain 65 176 IPR015914 GO:0003993|GO:0046872
Cma14g01873 540 Gene3D - 64 179 - -
Cma14g01873 540 PANTHER PURPLE ACID PHOSPHATASE 23 13 530 - -
Cma14g01873 540 Pfam Calcineurin-like phosphoesterase 187 401 IPR004843 GO:0016787
Cma14g01873 540 SUPERFAMILY Purple acid phosphatase, N-terminal domain 46 178 IPR008963 GO:0003993|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01873 K22390 ACP7; acid phosphatase type 7 - csv:101206188 1003.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01873 Cma-Chr14:13276276 Cma17g00099 Cma-Chr17:483372 0 dispersed
Cma14g01873 Cma-Chr14:13276276 Cma03g01161 Cma-Chr3:7800779 5.37E-96 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g848 . . . . . . . . . . . Cma14g01873 . Car14g01675 Sed12g0408 . Cpe03g01571 Bhi01g00061 Tan10g0557 Cmetu06g2760 . . . Lcy11g1746 . . . . . . . . . . Cone4ag0384 Lsi05g01814 Csa02g00942 . Cme06g00409 . Blo07g00296 Bda11g00659 . . . . Bma06g01625 . . Cmo14g01919 . . . . . . . . . . . . . Cla05g00371 Cam05g0404 Cec05g0409 Cco05g0409 Clacu05g0399 Cmu05g0384 Cre05g0446 . Csa03g01127 Chy06g00394 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009299 0 5 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01873 Cma_Chr14 FPKM 1.675238 1.869871 5.471766 5.858013 6.974089 6.96758 5.885849 0.555099 0.515665 0.554898