Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01878 ATGCGACCCGACCCGGTTCGCACCAGGGAGCACACACACGGTGGGTTTACAGAAGGGAAGAAAGAGAATGGAGGTGATTGGATGGCCTCACCATCGTCTTCTCCGTCGTACCTGAATTCAACCTGTGGCCTTCTCGCTTGCTTGGATTTGAACGAGAAACACGCCGAGAGTATGAAGGAGATGGAGACTGAATGGATCATGGATGTTCCCGATACACCTGATCGGTTAGCTGCCAGACAAAGTAATGGTGGACATTTTGTTCAAACTGAGACTGATTCATCTTTATCTAATCGTTTAAGAAACCCTGATTTCATGACAGAAAAGGGGATGAATGGCATGAAGGGCCTGGGGGTGCTTGTCAGTGAAAATGGGGATGAGTTGAGATTAGATAGTAGTTCCAAAAATATTCCTGGTGAGAATTTGAAGGGTCATAGAAACACCATTATTCTTTCACCGGGAGAGGATTCAGCATTGAAAAATAATCTGTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATATCAGGGACCGAAACGTTTTATTTGCCCTCGTCGCTTGGATAAAGGGATAACTATATCCGTTGACTCTCCTTCCAAACCACCACCTTGTCAAGAAAATCCCACCGGTCCACAAATAAGAGAACATGATCTTAAGTATAATCCTCAAACGTTTAATCGTAATGCGTCTAAGGACTGTAAGATTGAAAACACATCAAACGAACAGTCTGCACATTACATACCAATTTCTCCAAAGAAACCCAACATGAACATTAAAGGGAAGGAAAAAGTTGTTGAGGAATCATTCCAAGATGTTGGTTTATCTATGATTCATAGAAAGGGAGTTGAAAAATCCAATAACACTAATACTCAACATGAGAAGCAAGTTTTGGGTCATCGTCAGTTTGCTAGCTCCCCTAGAGCTACTGGGCATAAGAGGTTGGTACGGAATGGTTGTATCTCACCTCATAATGTTACAATAAGAGCAAAGAATTTATCTGAGCAGCGTGAAAAGAGTTCTAGAGCTGTTGGTGAGATTAATTTGAGGAACATACCATCAAACAGTCCATCTTGTCCGATAGATATAAATGATATAGTTGCTGAAGACAATTGTAGTAGCAAAGATAAAGGAAAGGGGATTATGCGTCAGCCTTCTGTATCACATGATAATGATAATGTCAGAGTTATTTCTGCTTCTAGCAGTGACACGGAAAAGGCTGTTGGAGCTAATCCAGCCAGAACGTCCAGATTAGGTACATCTGAATGTTTTGAAGAAGTAGGTGTTTGGAGAAGAACACATAACCATTCAAGGAAAGGGATTGCGTTGTCTAATCCATCAGGGAGTTCTTTTAAGAAGATAAATAACGTTGGAAGGTTTTCTAATGGAAAAACTGAAAGTGTCATGGAGAGACAAATCCCTAGTGGGCAAGAACATGTAGCAGAAACTGATTGTGCAGGAAATGGTGATACATCTCAAAGGGCTTACAGCATTGTACCCAAAATAGAACAAACTATCGTACCGACACATGTTGAAAGCAAACTAAACAAAAAACAAAGGAAACAAGGATCAACTTCACAAATTAATACTTCATGCCCCATTCCAGATGTCGTGTACCTTGGTACGTCTGAGGAGTCTTCAAATTCAAGGTCAACTAGACTCCAGAGTCGAAGAATTCGTGATAGTTTGAATGAAGTTATTGAGGTTGATGAGTTGTCACCTGAAATGAGAAACCCTGTCTCCCAGAATGTTGGCAGCTTAAATGATAACACCTCAGATGCTAGGGCAAGACAACTTGAAGCTGATGAGATGTTGGCTCGTGAACTTCAGGAGCAACTATATCAGGAGATCCCTATTGGAGGAGAAGAGATTGATGAACATTTAGCTATGGCACTGCAGCAGGTGGAGCATGGACATTTTGCACCCTCCCGCCAGACTTACAGTAGTCAGAGAGGCTCACTGGTAGCACAGGCAAATAGACGAACTCGATCTCAATCTTCACAAAACTCTTCTAATATAACACGGACTCGAGTAACCCACTCTACACGAATGGCACAGATGAGGAATCAATTTTTTGGTGGCTCTCATAGAGTGTCAACTAGACAAAGGAATGTTAATTTTCCGGTGCATATGGATTTGGATATGAGACTTGATATATTGGAAGCTCTGGAGGCTGCGGTTGGAGAAATGGAAGATGCAAGAATGAATAGGGACATCTTGCACAGCCGGCGTGATTTCAACGAGAATGATTATGAGATGCTGCTATCCCTTGACGAGAACAATCACCGCCATGCTGGTGCATCGACCAACCGGATTAATAGTTTGCCACAATCTACAGTACAGACTGACAGCATGGAAGACCCTTGTGCAATTTGTCTCGATACGCCAGCCATAGGAGATGTCATTCGCCATCTACCTTGCTTACACAAATTTCATAAAGATTGTATTGATCCATGGCTACAGAGGCGAACGTCATGCCCGCACACACAATCATACTCTTCTGTGGAACCAAGCCTGTTAGAATATTTTGTGCTTGAACTCTCGGTCGGAAGCGTAAGACTTCAAAGGTGCAATTCTCCATTGGGGAACGAAGAAAGCTTCCCAGCCTGA 2604 42.36 MRPDPVRTREHTHGGFTEGKKENGGDWMASPSSSPSYLNSTCGLLACLDLNEKHAESMKEMETEWIMDVPDTPDRLAARQSNGGHFVQTETDSSLSNRLRNPDFMTEKGMNGMKGLGVLVSENGDELRLDSSSKNIPGENLKGHRNTIILSPGEDSALKNNLLLRKGGREKYSYQGPKRFICPRRLDKGITISVDSPSKPPPCQENPTGPQIREHDLKYNPQTFNRNASKDCKIENTSNEQSAHYIPISPKKPNMNIKGKEKVVEESFQDVGLSMIHRKGVEKSNNTNTQHEKQVLGHRQFASSPRATGHKRLVRNGCISPHNVTIRAKNLSEQREKSSRAVGEINLRNIPSNSPSCPIDINDIVAEDNCSSKDKGKGIMRQPSVSHDNDNVRVISASSSDTEKAVGANPARTSRLGTSECFEEVGVWRRTHNHSRKGIALSNPSGSSFKKINNVGRFSNGKTESVMERQIPSGQEHVAETDCAGNGDTSQRAYSIVPKIEQTIVPTHVESKLNKKQRKQGSTSQINTSCPIPDVVYLGTSEESSNSRSTRLQSRRIRDSLNEVIEVDELSPEMRNPVSQNVGSLNDNTSDARARQLEADEMLARELQEQLYQEIPIGGEEIDEHLAMALQQVEHGHFAPSRQTYSSQRGSLVAQANRRTRSQSSQNSSNITRTRVTHSTRMAQMRNQFFGGSHRVSTRQRNVNFPVHMDLDMRLDILEALEAAVGEMEDARMNRDILHSRRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQTDSMEDPCAICLDTPAIGDVIRHLPCLHKFHKDCIDPWLQRRTSCPHTQSYSSVEPSLLEYFVLELSVGSVRLQRCNSPLGNEESFPA 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13298814 13305985 - CmaCh14G018780.1 Cma14g01878 308861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01878 867 MobiDBLite consensus disorder prediction 640 676 - -
Cma14g01878 867 MobiDBLite consensus disorder prediction 1 20 - -
Cma14g01878 867 MobiDBLite consensus disorder prediction 192 212 - -
Cma14g01878 867 PANTHER - 367 825 - -
Cma14g01878 867 MobiDBLite consensus disorder prediction 1 33 - -
Cma14g01878 867 SMART ring_2 787 827 IPR001841 -
Cma14g01878 867 ProSiteProfiles Zinc finger RING-type profile. 787 825 IPR001841 -
Cma14g01878 867 CDD RING-H2_PA-TM-RING 787 825 - -
Cma14g01878 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 831 IPR013083 -
Cma14g01878 867 Pfam Ring finger domain 787 825 IPR001841 -
Cma14g01878 867 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 367 825 - -
Cma14g01878 867 SUPERFAMILY RING/U-box 778 826 - -
Cma14g01878 867 MobiDBLite consensus disorder prediction 508 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01878 - - - cmax:111479662 1509.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02947 Cma-Chr4:19411306 Cma14g01878 Cma-Chr14:13298814 1.59E-06 dispersed
Cma14g01878 Cma-Chr14:13298814 Cma15g00098 Cma-Chr15:462268 7.13E-14 dispersed
Cma14g01878 Cma-Chr14:13298814 Cma06g01262 Cma-Chr6:8390476 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g856 . . . . . Bpe14g01298 . . . . . Cma14g01878 . Car14g01680 . Cpe08g00384 Cpe03g01575 . . . . . . . . . . . . . . Cone14ag0212 Cone15ag0233 . . Lsi05g01818 . . . . . . . . . . . . . Cmo14g01926 . . . . . . . . . . . . . . . . . . . . . Csa03g01121 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01878 Cma_Chr14 FPKM 4.64441 5.285635 4.486897 4.692661 11.318192 10.813477 10.298906 6.473293 5.204997 5.304037