Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01891 ATGGAGAAGGACGATAACTACTCGAACGAAGCTCCTATGCCGCCAAGCTTCTCCAGCCACCACCACCACCACCACGATCTCTACAACAACCAAGACCAATTCATGAGGTCACGCCCCTTCGAAACCTCCGCCGACAACGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCTACCTCCTCCACCGCTGCAATCGGTAACTTCTCCGGACAAGCTCAGCTTCGCTGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAGCTCAGCCTCAACCGGTTCGACGAGGATGACGAACCGGCCGGGATCGACCCAGTCTACTTCTTGAAGTTCCCGGTTCTGAATAACGAGCGGGCGGAGGAGGCGGCGGCCGGAGAGGAGGAAGCGGCGGAGATGGGAGGCAGAATTGTAGGGGAGTTAGAAGAAGAGGAGAATTTTAGGAACAATAAAAATGGTAATAATAATAATAATAATAATAATAATAATGGTAATGGTAATAGTAATAAAAGGAAAAGAGGAAGGACGGTGAAGACAAGCGAAGAGGTGGAGAGCCAAAGAATGACGCATATTGCAGTGGAGAGAAATCGAAGGAAGCAGATGAATGAACATCTCCGGGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCCTCCATAATCGGCGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTTCTCCAGTGTCTAGAATCGCAAAAACGACGTCGTCTCCTAGGAGAGCCACCACTACAGGCAGGCGACACACCTCCGCCGCAGCAACCGCCATTTCTTCCGCCGGGAGCAGGGAATTTCGGTGGTCACCAAAACGAGGGGCAAATATTGGAAACGACGGCGGAGAGCAAATCGTGCTTAGCTGACGTGGAAGTGAAGGTTTTAGGGTTCGACGCAATGATAAAGATCCTGTCGAGAAGACGACCGGGACAGCTGATTAAAGCCATCGCCGCCCTCGAAGATCTTCACCTCAATATTCTTCATACAAATATTACCACCATTGAACAGACTGTTCTTTATTCCTTCAACGTCAAGATAGCAAGCGAGTCAAGATTCACAGCAGAGGATATTGCGAGCTCGGTTCAGCAGATATTCGGTTTTATTCATGCGAACACCGGCATGTGA 1152 50.69 MEKDDNYSNEAPMPPSFSSHHHHHHDLYNNQDQFMRSRPFETSADNATGILTYFPANPLPPPPLQSVTSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPAGIDPVYFLKFPVLNNERAEEAAAGEEEAAEMGGRIVGELEEEENFRNNKNGNNNNNNNNNNGNGNSNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQAGDTPPPQQPPFLPPGAGNFGGHQNEGQILETTAESKSCLADVEVKVLGFDAMIKILSRRRPGQLIKAIAALEDLHLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13384125 13387337 + CmaCh14G018910.1 Cma14g01891 308874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01891 383 MobiDBLite consensus disorder prediction 145 186 - -
Cma14g01891 383 SMART finulus 189 240 IPR011598 GO:0046983
Cma14g01891 383 MobiDBLite consensus disorder prediction 172 186 - -
Cma14g01891 383 Gene3D - 175 249 IPR036638 GO:0046983
Cma14g01891 383 PANTHER TRANSCRIPTION FACTOR FAMA 53 382 - -
Cma14g01891 383 CDD bHLH_AtFAMA_like 186 254 - -
Cma14g01891 383 MobiDBLite consensus disorder prediction 1 24 - -
Cma14g01891 383 MobiDBLite consensus disorder prediction 252 281 - -
Cma14g01891 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 234 IPR011598 GO:0046983
Cma14g01891 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 254 IPR036638 GO:0046983
Cma14g01891 383 MobiDBLite consensus disorder prediction 256 270 - -
Cma14g01891 383 MobiDBLite consensus disorder prediction 148 168 - -
Cma14g01891 383 ProSiteProfiles ACT domain profile. 309 383 IPR002912 -
Cma14g01891 383 CDD ACT_UUR-ACR-like 309 373 - -
Cma14g01891 383 Pfam Helix-loop-helix DNA-binding domain 184 235 IPR011598 GO:0046983
Cma14g01891 383 PANTHER TRANSCRIPTION FACTOR FAMA 53 382 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01432 Cma-Chr6:9199180 Cma14g01891 Cma-Chr14:13384125 6.62E-51 dispersed
Cma14g01891 Cma-Chr14:13384125 Cma14g02163 Cma-Chr14:14838337 3.10E-52 dispersed
Cma14g01891 Cma-Chr14:13384125 Cma12g00225 Cma-Chr12:1104808 9.00E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36336 PF00010 HLH 7.90E-10 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01891 - - cpep:111790068 633.639