Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01894 ATGGATTCAAGGTCTAGAGAGAGAAAGAGAAAAAATGCTCTCTGGGTTTTCACAGGAACCGGCGGGAATGTCCTCTGCCATTCCGGCGCTGCCGATGGACGGCGGTGGCGGCGGCGGAAAGTTTCAGGGTTCTCTAGATGGAACGAATCTCCTGGAGATGCTTGTTTGGTTCTCACGTCGGATCCCAAGCCACGCCTCCGATGGACGGCGGAGCTCCATGAGCGATTCGTCGACGCCGTCACTCAGCTCGGCGGCTCCGATAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCAGGAAGCAATCGTTGAAGGAATTGACGGAGAACTCGAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCATCATCGCCATCATCGAAAATAATAGCTCGAGATTTGAACGATTTTGTTTTTCGAACAGTAGTTTCCAAGTCACTGAGGCGTTACGAGGCGTTACGAGCACAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTGCAGCGTCGACTTCAACTTCACATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCGTGTCGAGAATTGAGCGATCAGGCTGCAGCATCTGCTGGACTCGAAGCTGCACGAGAAGAGCTCTCTGAACTTGCAATGAAAGTAGCCAATGAGTCTAAAGAGATGGCACCCTTGGAGGCTCAAAAAGTGCCTCCCTTTTCAGAACTTACTGCTACTCTAGAAAATCCAAAGGCTCCTACGGTTATGCCTCGAGTAGGCGATTGCTCGATGGATAGCTGCTTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTACCACCGGAATGAAGAGACCGAGATCAGTTTTTAGTCATGGAGATTCGATGGCACTCGAGGGCAATGCTCGACACGACGTCGAATGGATGATGAATAATACCAAAGCGAAACCCGTTCCATTTGTCTTCCCTCCGTTGCTTTTTTGTTTCCTATTTCCTCCGCCGAACTTCAGACGAGCTTACTTCTCAGTGTTTCCATGGAAGTTTCATCTGGCACACATTGATTTTCTCTATCTTTTACTCTAA 1152 49.05 MDSRSRERKRKNALWVFTGTGGNVLCHSGAADGRRWRRRKVSGFSRWNESPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGSDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLRKQSLKELTENSKDASCIAESQETSSSSSPSSKIIARDLNDFVFRTVVSKSLRRYEALRAQMEVQRRLHEQLEVQRRLQLHIEAQGKYLQSILERACRELSDQAAASAGLEAAREELSELAMKVANESKEMAPLEAQKVPPFSELTATLENPKAPTVMPRVGDCSMDSCLTSAGSPVSPIGVGSTTTGMKRPRSVFSHGDSMALEGNARHDVEWMMNNTKAKPVPFVFPPLLFCFLFPPPNFRRAYFSVFPWKFHLAHIDFLYLLL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13402453 13408311 + CmaCh14G018940.1 Cma14g01894 308877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01894 383 Pfam Myb-like DNA-binding domain 66 116 IPR001005 -
Cma14g01894 383 Gene3D - 62 120 - -
Cma14g01894 383 Coils Coil 172 192 - -
Cma14g01894 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 31 334 IPR044848 GO:0003700
Cma14g01894 383 Pfam MYB-CC type transfactor, LHEQLE motif 172 215 IPR025756 -
Cma14g01894 383 MobiDBLite consensus disorder prediction 130 149 - -
Cma14g01894 383 PANTHER PROTEIN PHR1-LIKE 2 31 334 - -
Cma14g01894 383 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 63 119 IPR006447 GO:0003677
Cma14g01894 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 120 IPR017930 -
Cma14g01894 383 Coils Coil 227 247 - -
Cma14g01894 383 SUPERFAMILY Homeodomain-like 63 121 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01737 Cma-Chr6:10622119 Cma14g01894 Cma-Chr14:13402453 4.36E-54 dispersed
Cma07g00372 Cma-Chr7:1584587 Cma14g01894 Cma-Chr14:13402453 1.32E-56 dispersed
Cma14g01894 Cma-Chr14:13402453 Cma19g01121 Cma-Chr19:9211380 8.49E-63 dispersed
Cma14g01894 Cma-Chr14:13402453 Cma06g01228 Cma-Chr6:8190100 4.50E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36337 PF00249 Myb_DNA-binding 1.40E-07 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01894 - - csv:101213244 424.861