Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01894 ATGGATTCAAGGTCTAGAGAGAGAAAGAGAAAAAATGCTCTCTGGGTTTTCACAGGAACCGGCGGGAATGTCCTCTGCCATTCCGGCGCTGCCGATGGACGGCGGTGGCGGCGGCGGAAAGTTTCAGGGTTCTCTAGATGGAACGAATCTCCTGGAGATGCTTGTTTGGTTCTCACGTCGGATCCCAAGCCACGCCTCCGATGGACGGCGGAGCTCCATGAGCGATTCGTCGACGCCGTCACTCAGCTCGGCGGCTCCGATAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCAGGAAGCAATCGTTGAAGGAATTGACGGAGAACTCGAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCATCATCGCCATCATCGAAAATAATAGCTCGAGATTTGAACGATTTTGTTTTTCGAACAGTAGTTTCCAAGTCACTGAGGCGTTACGAGGCGTTACGAGCACAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTGCAGCGTCGACTTCAACTTCACATTGAAGCACAAGGAAAATACTTGCAGTCGATACTCGAGCGGGCGTGTCGAGAATTGAGCGATCAGGCTGCAGCATCTGCTGGACTCGAAGCTGCACGAGAAGAGCTCTCTGAACTTGCAATGAAAGTAGCCAATGAGTCTAAAGAGATGGCACCCTTGGAGGCTCAAAAAGTGCCTCCCTTTTCAGAACTTACTGCTACTCTAGAAAATCCAAAGGCTCCTACGGTTATGCCTCGAGTAGGCGATTGCTCGATGGATAGCTGCTTGACATCAGCTGGAAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTACCACCGGAATGAAGAGACCGAGATCAGTTTTTAGTCATGGAGATTCGATGGCACTCGAGGGCAATGCTCGACACGACGTCGAATGGATGATGAATAATACCAAAGCGAAACCCGTTCCATTTGTCTTCCCTCCGTTGCTTTTTTGTTTCCTATTTCCTCCGCCGAACTTCAGACGAGCTTACTTCTCAGTGTTTCCATGGAAGTTTCATCTGGCACACATTGATTTTCTCTATCTTTTACTCTAA 1152 49.05 MDSRSRERKRKNALWVFTGTGGNVLCHSGAADGRRWRRRKVSGFSRWNESPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGSDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLRKQSLKELTENSKDASCIAESQETSSSSSPSSKIIARDLNDFVFRTVVSKSLRRYEALRAQMEVQRRLHEQLEVQRRLQLHIEAQGKYLQSILERACRELSDQAAASAGLEAAREELSELAMKVANESKEMAPLEAQKVPPFSELTATLENPKAPTVMPRVGDCSMDSCLTSAGSPVSPIGVGSTTTGMKRPRSVFSHGDSMALEGNARHDVEWMMNNTKAKPVPFVFPPLLFCFLFPPPNFRRAYFSVFPWKFHLAHIDFLYLLL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13402453 13408311 + CmaCh14G018940.1 Cma14g01894 308877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01894 383 Pfam Myb-like DNA-binding domain 66 116 IPR001005 -
Cma14g01894 383 Gene3D - 62 120 - -
Cma14g01894 383 Coils Coil 172 192 - -
Cma14g01894 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 31 334 IPR044848 GO:0003700
Cma14g01894 383 Pfam MYB-CC type transfactor, LHEQLE motif 172 215 IPR025756 -
Cma14g01894 383 MobiDBLite consensus disorder prediction 130 149 - -
Cma14g01894 383 PANTHER PROTEIN PHR1-LIKE 2 31 334 - -
Cma14g01894 383 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 63 119 IPR006447 GO:0003677
Cma14g01894 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 120 IPR017930 -
Cma14g01894 383 Coils Coil 227 247 - -
Cma14g01894 383 SUPERFAMILY Homeodomain-like 63 121 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01894 - - - csv:101213244 424.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01737 Cma-Chr6:10622119 Cma14g01894 Cma-Chr14:13402453 4.36E-54 dispersed
Cma07g00372 Cma-Chr7:1584587 Cma14g01894 Cma-Chr14:13402453 1.32E-56 dispersed
Cma14g01894 Cma-Chr14:13402453 Cma19g01121 Cma-Chr19:9211380 8.49E-63 dispersed
Cma14g01894 Cma-Chr14:13402453 Cma06g01228 Cma-Chr6:8190100 4.50E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma19g00216 . 150 347 G2-like Transcription Factor Family AT5G16560 51.5 1.2e-40 164.9
Cma09g00194 CCT 1 164 G2-like Transcription Factor Family AT5G42630 56.8 1.4e-38 157.1
Cma12g00506 CCT,CST 13 151 G2-like Transcription Factor Family AT5G42630 58.6 7.9e-37 151.4
Cma04g02062 . 20 258 G2-like Transcription Factor Family AT1G25550 51.6 2.6e-50 196.4
Cma15g00910 . 20 257 G2-like Transcription Factor Family AT1G25550 53.4 1.0e-49 194.5
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT5G05090 54.6 1.5e-74 276.9
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 5.3e-72 268.5
Cma14g00494 . 1 253 G2-like Transcription Factor Family AT5G05090 60.1 3.3e-66 249.2
Cma06g00034 . 1 274 G2-like Transcription Factor Family AT5G05090 51.7 1.3e-65 247.3
Cma06g01228 . 12 316 G2-like Transcription Factor Family AT4G13640 56.3 1.2e-61 234.2
Cma14g01894 . 44 336 G2-like Transcription Factor Family AT4G13640 50.3 2.1e-53 206.8
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma06g01737 . 38 269 G2-like Transcription Factor Family AT1G69580 50.4 2.3e-40 163.7
Cma05g00862 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 9.1e-37 151.8
Cma19g01121 . 1 379 G2-like Transcription Factor Family AT1G79430 53.8 7.8e-87 318.2
Cma10g01192 . 1 340 G2-like Transcription Factor Family AT1G79430 54.6 4.4e-82 302.4
Cma20g00290 . 1 365 G2-like Transcription Factor Family AT1G79430 52.7 2.5e-77 286.6
Cma02g00669 . 1 359 G2-like Transcription Factor Family AT1G79430 52.4 3.3e-77 286.2
Cma14g01894 . 52 225 G2-like Transcription Factor Family AT1G79430 59.8 9.3e-40 161.8
Cma06g01228 . 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cma06g01737 . 77 285 G2-like Transcription Factor Family AT3G04030 59.4 3.1e-47 186.4
Cma06g01737 . 77 269 G2-like Transcription Factor Family AT5G18240 50.5 1.6e-38 157.5
Cma07g00373 . 76 319 G2-like Transcription Factor Family AT2G01060 60.7 2.8e-56 216.1
Cma03g00611 . 84 327 G2-like Transcription Factor Family AT2G01060 59.3 1.9e-52 203.4
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 1.3e-88 323.9
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT3G10760 60.8 3.0e-88 322.8
Cma06g00034 . 1 277 G2-like Transcription Factor Family AT3G10760 58.8 8.6e-80 294.7
Cma14g00494 . 1 258 G2-like Transcription Factor Family AT3G10760 56.6 2.3e-72 270.0
Cma06g00034 . 1 205 G2-like Transcription Factor Family AT2G40970 62.5 1.5e-60 230.3
Cma07g01099 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.4e-60 228.0
Cma03g00158 . 64 266 G2-like Transcription Factor Family AT2G40970 58.8 1.4e-58 223.8
Cma14g00494 . 1 192 G2-like Transcription Factor Family AT2G40970 59.0 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36337 PF00249 Myb_DNA-binding 1.40E-07 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01894 Cma_Chr14 FPKM 0.792535 1.045193 1.229333 1.611451 10.347747 10.070107 9.174788 0.957905 0.853334 2.08514