Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01899 ATGTACGGAGGACCATCCAATTTCAATACTCGTGGCTCCCGCAAGCGGCAGCGCCGGAGGCAGAATCAGAAACGGCCGTCACAAGCGCAGTTTCCAGCTGCGCCACATTTGAACCCCAATGTCCCGGTTCAAAATCTTAATCATCCTCTTCAAAATCCCAATGTGTTTATTCCTGGAACGTCAACTTCCCTATGCAGAACTCGAACTTGCCGGAGCAAAATCTTGGGTTTCAGTTCTCCCAGCCTCCCAGTCCAGGTTTCCGATTTCGTCAACCTTCCAGAACAGCCGCAAAGTCCGACTACGAAGTCAGCAGAAGGAATCGCGAGGATCAATCACGCTGTAGCCAAGGCACACAGCGATCTTCTTGTGGCTGGGGAAAGCATCTCAGCTTGGAAGGTCTCGCAATCAGCGCTTTCGATTCTCCAGGTCAATTCATGGGAATATTTAGGGTTCCGTATGCAGGAAGTCGATGCTCTTCACCGCCTCATTGTGATGGAAGGGAAGATCAATTCATTTATTCACTGCTTTGTGGGGGTGAGAAGAATCACTACATTATATGAATTGGAGAAGGCTATATGCAAGGATGAGGGAGTTAAGCAATTTGAAGAGTTGAGACTGGGCCCTTTACTGCGTCATCCTCTTGTATTGCATTATTTCTCGGTGAATTCTGAGGTAACTGAAGTATTTAAAATAAAGAGTGAGGAGATTATTTGTTATCTTTCGGAGATCATGGATGTGGATGCTTGTAGAAACAAAAATATTATGGTCGAAGACTTTTGGACTTCATTTCCAGGAAGCGATCAGTCACAAAGAAGGAAATGCTGGGTATACGTGACCCATATATCTGTTATCCGAAAAGCTAGAAGATCAGAAGATGACATTCTCAGCAAGTATCTAACAAAATCTAATGAGAAACGCTGGAAGCAACCTCTTTTCTCAATGAAGAAGCAACAGCTAGATGAGCGTTTTAGTGCAATATCTCAGCGAGTTGAATCATCTTCCTCTGTTCCCAAAGACTATTGTGGCAAGCATGTTAGATTTTCCTCTAAAAGCTCAGGAGATGAAGACAGTGATGATAACGCACACGAAACTGAAAAGAATGGCAACGATTCAAGCTCCGGTCTAAAAGTTCCATTGCAAATTAATAAAAGTTACGATGGTTCAAGTAGCTGTCCTTACCCATCTGCAACTGAAGAGGTGGCGCGGCTTGGGTTGAATGGTGAAGTAAGTGTCCATGCCTCTCCTATTGGCAGCCAAAAGGACAGTATAGGTAATGGTACATCCAAAAGGAAAAGGAAATCTGGACATCAAATGCACACTACTTTTGGATCCCCAACATTAGGTAAAAAAGTCAAGAAGCCAGCCTCCTCGAAAAAAGATAGTTTTGATAATTCTGATGAAGGCAGTGGCGATGAAGCGGAATGTAAAATTACAAATAATTCTTTGAGGATGTTCATCACAACATGGAAGGATGGATGTAGAGATGCAACTGTGCCAGAGGTACTCAAACGGATGTTTCACCATTATGGCATAAAACTTGGATCAAGAAAAAGCGTGAGATCAATGATATCATCGTACCCATTCATTGGATTACTCAATGTCGCTGTTTCAGCTATTAAGAATGGGATGTGGGACAGCATTTATGATTCTCTACAAACAATCAATCTACATGAACTGACTAATACACATGTTGGGAAACAACCAGTACATGAGTGCATAGATGTAGGTCCAAGTGCAGAGGGCGCTCTTATTAAGCATGTTCCGAAGTCTACATATGGCATCACTGTCGAAGATATCCTCAACAAAGTTGGTCAGCATATCAAGTCTGAGCAGGAAAATAAATTAATCTTGACTTTTGTGAGGTGCTTCCTGACGCTTTTTCCCATGTATCAAGTTAGAAGTTCAAAGTTGGTACGTGATATTGGGTTCAAGACTCGAGTTTCGCTCGACGACACTTTTGATATTCTAAAAGTGTGGAGAAGCCAGAAACCTTTCAAGACAAGCATATCTCAAATGTGCACTTTCTATACATTCTTGTGGAATGAGATGGCTGCATCAAAACAGAAAATTTTGGAGGAATTGCATTCAGGGCCTTTTATATTCGTCCCTATTGTAGCTGACTCTAGGCACGAGGATGTGGTGTCGGGTATATTTTTGTCTCCTAAGGAAGTATATTGGCATGACCCTATTGGCGCTATTGACAAGATTAAGGATGTTTATCTTCAATGCCGCTTGACAAACACGGTCGATTGTCCCATAATCAAGAGTTTATGCAATATTTATCCAGGGCTTAAGAATTTTTTTGTTGATGAATGTGGAATTCATGAATACCCTCCTCTAAGGAGTTATCTTCCGATTTTGAAACAGTTATCAGCTGTTGCTTTGCCTTCACAAGCTGGTATTCCAAGTCTTTCTAAAAGGGGCAAATGGACTAAAATCAGGACTCTGGGTTCAGAAGATACGGCTTACCTGAAGGAATGTATCGGAAACTCCGAGTTCATGGTCCTTCCCACGGAACAAGATAAATGGGTTTCGCTTCATCCTTCCACTGGCATCGTGTGCTGGTGTGATGATAAGGAATTAAAACAGCAATGTAAGAATATGGGCAAAATATATTTTGTAGACTTCAGTGAGATCGACAGTGACAAAACCGAGGTTTTCCGGGCACAATTCTCTCACCTCTTGAAAGCTTTAGGGGTTCCTCTTCTTTCTGAGATCGTAACTCATGAAGCGAAATATTATGGTCTGAGGGACTCTAGCTTCATGACTTCATTAATGAACTGGGCTCTTCCTTTTGCTCAGCGCTACGTATTTAGCGTACACCCCGACAGATATGCCGAGCTTAAGCAATCTGAATTTGACGTCCTGAGTTGTCTGCAAGTAATTGTTGTTGAAAAGCTGTTTTTCAGAAATGTTATAAAGAATTTCGGACGTGCTTCTGGTGAACAGATTCCATGTAGCTGTCTTCTGCAGGATAATATTTTATACACAACCCAAGACTCGGGTTCTCATTCGTTGTTTATGGAGTTTTCTCGTTTGCTATTCGATGGAGCTCTCGAGCTTCATTTGGCCAACTTCCTTCACATGATCACCGCCATGGACGAATCGGGTTCTTCCGAAGAGCAAACAGAGTGTTTTATCCTGAATACTCAAAAGGTCACAAAGCTTCCCAAGGAGGAACCTGTTTGGTCTGTCTCATCTGTCATCTCAGTCGTTGAGTCTCACAACTTACTTCAAACCTTACCAAACAGCCAAGGATCATCTTTCAAGGCTAAAGATAAAGCAAGAAATTGGCCACCGGTCGACTGGAAAACGGCTCCGGGTTGTAGTTTTGCTCGTGAAAATGGTCTCAAAATGCAACCAGGAAGCTCACTGCCTCGCAACCGATATGCAGAAAACGCTTTTGAAGTCGTCGACAAGCAAACAGAGAACTTGTCTCCAGTTTCAACAGCCACAGACTGGACCTATGAAGATGATTTATCTGCAATGTCAGTAGCATCGGTTGTTAAAGGCAGTGGTGATAAAATTGGTTCTCAGTCCAATTCGAGTGGCTTTGCATGGAAAATGCAGCTTAGAACTCGCACCATCGATCCAGCACAGTCAACGGTAACTGGGAGACTCGGCGAGCAACTAGTTAAGTGGGTTAATGAGGACTCAGAATCTGGATTCCCCTTTGATATAATTGTAGGAGACAACGAGGAGAATAGACAGTACATTGAAGTGAAATCAACCAGATCTGCAAGGAAAGATTGGTTCAACATATCAATGAGAGAATGGCAATTTGCAGTCGAAAAGGGAAAATCATTCAGCATTGCACACATTTTATTATTAGCTAATAACGTCGCCCGGGTCTCGGTTTTTAAGAACCCAGTTAAACAATGCCAGTCGAGCAAGCTCCAACTGGCTCTTTTAATGCCCAAGCAAAAGTACTCCACTGTCTTCTCCTCCTGA 3951 42.67 MYGGPSNFNTRGSRKRQRRRQNQKRPSQAQFPAAPHLNPNVPVQNLNHPLQNPNVFIPGTSTSLCRTRTCRSKILGFSSPSLPVQVSDFVNLPEQPQSPTTKSAEGIARINHAVAKAHSDLLVAGESISAWKVSQSALSILQVNSWEYLGFRMQEVDALHRLIVMEGKINSFIHCFVGVRRITTLYELEKAICKDEGVKQFEELRLGPLLRHPLVLHYFSVNSEVTEVFKIKSEEIICYLSEIMDVDACRNKNIMVEDFWTSFPGSDQSQRRKCWVYVTHISVIRKARRSEDDILSKYLTKSNEKRWKQPLFSMKKQQLDERFSAISQRVESSSSVPKDYCGKHVRFSSKSSGDEDSDDNAHETEKNGNDSSSGLKVPLQINKSYDGSSSCPYPSATEEVARLGLNGEVSVHASPIGSQKDSIGNGTSKRKRKSGHQMHTTFGSPTLGKKVKKPASSKKDSFDNSDEGSGDEAECKITNNSLRMFITTWKDGCRDATVPEVLKRMFHHYGIKLGSRKSVRSMISSYPFIGLLNVAVSAIKNGMWDSIYDSLQTINLHELTNTHVGKQPVHECIDVGPSAEGALIKHVPKSTYGITVEDILNKVGQHIKSEQENKLILTFVRCFLTLFPMYQVRSSKLVRDIGFKTRVSLDDTFDILKVWRSQKPFKTSISQMCTFYTFLWNEMAASKQKILEELHSGPFIFVPIVADSRHEDVVSGIFLSPKEVYWHDPIGAIDKIKDVYLQCRLTNTVDCPIIKSLCNIYPGLKNFFVDECGIHEYPPLRSYLPILKQLSAVALPSQAGIPSLSKRGKWTKIRTLGSEDTAYLKECIGNSEFMVLPTEQDKWVSLHPSTGIVCWCDDKELKQQCKNMGKIYFVDFSEIDSDKTEVFRAQFSHLLKALGVPLLSEIVTHEAKYYGLRDSSFMTSLMNWALPFAQRYVFSVHPDRYAELKQSEFDVLSCLQVIVVEKLFFRNVIKNFGRASGEQIPCSCLLQDNILYTTQDSGSHSLFMEFSRLLFDGALELHLANFLHMITAMDESGSSEEQTECFILNTQKVTKLPKEEPVWSVSSVISVVESHNLLQTLPNSQGSSFKAKDKARNWPPVDWKTAPGCSFARENGLKMQPGSSLPRNRYAENAFEVVDKQTENLSPVSTATDWTYEDDLSAMSVASVVKGSGDKIGSQSNSSGFAWKMQLRTRTIDPAQSTVTGRLGEQLVKWVNEDSESGFPFDIIVGDNEENRQYIEVKSTRSARKDWFNISMREWQFAVEKGKSFSIAHILLLANNVARVSVFKNPVKQCQSSKLQLALLMPKQKYSTVFSS 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13427901 13436338 + CmaCh14G018990.1 Cma14g01899 308882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01899 1316 MobiDBLite consensus disorder prediction 344 395 - -
Cma14g01899 1316 MobiDBLite consensus disorder prediction 453 473 - -
Cma14g01899 1316 PANTHER RIBONUCLEASE H-LIKE DOMAIN, REVERSE TRANSCRIPTASE, RNA-DEPENDENT DNA POLYMERASE-RELATED 627 1309 - -
Cma14g01899 1316 PANTHER RIBONUCLEASE H-LIKE DOMAIN, REVERSE TRANSCRIPTASE, RNA-DEPENDENT DNA POLYMERASE-RELATED 99 607 - -
Cma14g01899 1316 MobiDBLite consensus disorder prediction 1 42 - -
Cma14g01899 1316 MobiDBLite consensus disorder prediction 411 473 - -
Cma14g01899 1316 Pfam Protein NO VEIN, C-terminal 1203 1278 IPR024975 -
Cma14g01899 1316 MobiDBLite consensus disorder prediction 344 366 - -
Cma14g01899 1316 PANTHER WU:FJ29H11 99 607 - -
Cma14g01899 1316 PANTHER WU:FJ29H11 627 1309 - -
Cma14g01899 1316 MobiDBLite consensus disorder prediction 367 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01899 - - - mcha:111016138 1018.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01235 Cma-Chr6:8220345 Cma14g01899 Cma-Chr14:13427901 0 dispersed
Cma14g01899 Cma-Chr14:13427901 Cma06g01234 Cma-Chr6:8219059 1.63E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g994 . . . . . . . . . . . Cma14g01899 Car06g01063 Car14g01700 Sed02g1510 Cpe08g00402 Cpe03g01599 Bhi01g00222 Tan10g0511 Cmetu06g0585 . Hepe05g1766 . Lcy11g1779 . . . . . . . . . . . Lsi05g01848 . . Cme06g00377 . . Bda11g00344 . . Bpe13g00862 . Bma06g01278 . Cmo06g01248 Cmo14g01952 . . . . . . . . . . . . . Cla05g00343 Cam05g0374 Cec05g0378 Cco05g0379 Clacu05g0368 Cmu05g0353 Cre05g0417 . Csa03g01089 Chy06g00358 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004540 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 1 1 1 4 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01899 Cma_Chr14 FPKM 1.219216 1.31792 2.653994 2.322781 2.386864 2.276971 2.003341 3.419147 3.085072 3.584883