Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01904 ATGGAATGGAAGCCAAGATTGCTTTTATATCGATTGCCGCTCCCTCTTTCCCTTCCCCTTTCTCCCTTTCTTTTCCCCATTTCTTCATCTTCCGCTTCGTCTCGGCAAGTTTCTTGGGTTTCCTCTTTCGATCGGCCTGCTCCAGCCGCAGTCCGCCGTTCCGTTCTCCTCCAGACACAAAGGGCTGTCGGAATGAGCATTCAAAGTACAAATGATCTACATGAACGGAGAGCAAGAGTTGTTGAGAGAAGAACAAGATTGGACATTGACTTAAATTGTCCACCCCCAGATGAGTGCATTGACCCAACTGGCCCTCACGACGAAGCGGCACAGTACAATAATCATCACCGAGAACAAGCTACGGATGCGGTTGATGAGGACATTGCTATAATCTCCCCTCGGAAATTTGCTGAAGCCAGGAAGAATTTTCGAAGAAACCACTTTGAGAGTAGCTATGGTGTAGTCGTCAGACGTAATGGCAGCACAGAAGTTTATAGTGCTCTCACAGATGTATCAAGTTGGCCCCCTTTTACAATTTGGTCGCCCCGTACGAATAGGAACAGTGTATCCATACAGGAACAACAAACAACTCACAACTTGGACCTCCGCTTAAGCTGTGAAACTAGTAGCAGGGCCACTAAGGTAAAAACTGACATTGATATTCCTTCTGCACCTGCACTAAGTAGTAGCCTCACACCTGCAGATCGGAAGTTGCGGTGTGCGATCTGCATAGAACCATTGGTCGAAGAAACGACGACAAAATGTGGGCACATTTTCTGCAGGAATTGCATTGAAATAGCCATTGCTACTCAACACAAATGTCCCATATGTCGGCGTAAGCTTAGAAAACGAGATATTATCCGGATTTACCTTCCTTTTTCGACCCAATATTCAAGCGCTCGGCCTCCAGTTTCGGGTTTAGTTCAAATAAGCCGCCACGGGAATACTAAACATTCTCTCCACTTCTCTCCCGTTTTGAGTTTCGCCACGGGGATACTGATAACGCGAGGAATCTCTCTCGGTTCTGTGCGAATTCCGGCTGTCGATGAAGAAAATAATGCCGGAATCGGTGGAAGCTACACCGTCTGTGTCTTCAAGCCTCGATCTCTAAGCAGTTCGAAGGTTTCTCTCTGTCTTGTTTCTGTGTGCACTAATTACGTTCGAATCCGCGAGCTAGAAGAGTTGCAGAGATCTTTGGAGGAAGATGAAGCTTATAGCACGGATTCATCAGGTTCTGAGAAGTTACTGAAGGAATGCGCTCTCCATCTCGAGAGCAGGCTACAGCAGGTTCTGTCAGAATGCTCTAACGTTGATAGTTTCTTGGGGATTGATGACTTAGATGCATATGTGGAACACATGAAAGAGGAACTCGTAGCGGTGGAAGCTGAAAGCAGCAAAATCTCTAATGAGATAGAGGATCCTGAGAATGAAACATTTAATTTCTGCTCTATGAATGGTGAAGACCAAATGAACGTGATAGTTGACCGTGAATGCAATGCTTTTGAGGTTTTGGAACTTGATAGTCATATTGAGAAGAATAAAAGAATTCTGAAATCTTTGCAGGAAGTAGATGAGATATTTAAAAGTTTGGATGTTGTTGAACAGGTTGAGGACACAATTGGAGGTCTGAAGGTCATTGATGTTGCTGATAATTTCATTAGATTGTCATTACGTACACATATTCCAAACTTGGAAGATTTTTCAAGCTTACAGAGACTTGAAGGAATGATCGAGCCATCGGAATTGAATCACGAGTTGCTAATAGAAGTTTTGGAAGGGACAATGGAGTTAAAGAATGCTGAGATCTTTCCTGGTGATGTCCACTTGCACGATATCATCAATGCTTCAAAGTCAGTCAGCAATTCATTGGAATGGTTCGTGAAAAAAGTACAAGATAGAATTGTTTTGTGTACTCTTAGGCGATTTGTTGTAAAGAGTGCAAACAAATCAAGGATTGATGCGTTTATTAAGGTGTCTCAAGGCTGGCCACTAGCCGATTCTCCACTGAAACTTGTATCACTCAAGAACTCAGACCATTATACAAAAGGTGCTTCCTTAAGCCTCGTTTGCAAGGTGGAGAAAATGGCAAATTCCTTGGACGCACGTATTCGTCAAAATCTATCAAGCTTTGCAGACGCTGTTAAAAACATATTGAAGGAGCAAATGCATTTAGAACTCCAAGCTGACAGTGAGAACCTTCCCAAACCCAAACCCAAACCCAAATCCAAAACCAAATCCAAACCCAAACCAAAATCAAATCCAACTCCAAACCCAAACCCAAACCCAAACCCAAACCCAAATCCAAACCAAAATCCAAACCCAAATCCAAACCAAAATCCAAACCCAAATCCAAATCCAAACCCAAATCCAAACCAAAATCCAAATCCAAACCCAAACCAAAATCCAAACCCAAACCAAAATCCAAACCCAAACCCAACTCCAACTCCAACTCCAACTCCAACTCCAAACCCAAACCCAAACCAAAATCCAAACCCAAACCCAACTCCAACTCCAACTCCAACTCCAACTCCAAACCCAAACCCAAATCCAAATCCAAAACCAAACCCAAACCCAAACCCAAATCCAAATCCAAAACCAAATCCAAACCCAAACCCAAACCCAAACAAAAATCCAAATCCAAACCCAAACCCAAACCCAACTCCAAACCCAAATCCAAAACCAAATCCAAACCCAAACAAAAATCCAAATCCAAACCCAAACAAAAATCCAAATCCAAACCCAAACCCAACTCCAAACCCAAACCCAAATCCAAAACCAAACCAAAATCCAAATCCAAATCCAAAACCAAACCAAAATCCAAATCCAAACCCAAACCAAAATCCAAATCCAAACCCAAACCAAAATCCAAATCCAAACCCAAACCCAATCCCAAATCCAAATCCAAATCCAAATCCAAACCAAGGATGTCTACAGAAATTTGAA 2943 42.81 MEWKPRLLLYRLPLPLSLPLSPFLFPISSSSASSRQVSWVSSFDRPAPAAVRRSVLLQTQRAVGMSIQSTNDLHERRARVVERRTRLDIDLNCPPPDECIDPTGPHDEAAQYNNHHREQATDAVDEDIAIISPRKFAEARKNFRRNHFESSYGVVVRRNGSTEVYSALTDVSSWPPFTIWSPRTNRNSVSIQEQQTTHNLDLRLSCETSSRATKVKTDIDIPSAPALSSSLTPADRKLRCAICIEPLVEETTTKCGHIFCRNCIEIAIATQHKCPICRRKLRKRDIIRIYLPFSTQYSSARPPVSGLVQISRHGNTKHSLHFSPVLSFATGILITRGISLGSVRIPAVDEENNAGIGGSYTVCVFKPRSLSSSKVSLCLVSVCTNYVRIRELEELQRSLEEDEAYSTDSSGSEKLLKECALHLESRLQQVLSECSNVDSFLGIDDLDAYVEHMKEELVAVEAESSKISNEIEDPENETFNFCSMNGEDQMNVIVDRECNAFEVLELDSHIEKNKRILKSLQEVDEIFKSLDVVEQVEDTIGGLKVIDVADNFIRLSLRTHIPNLEDFSSLQRLEGMIEPSELNHELLIEVLEGTMELKNAEIFPGDVHLHDIINASKSVSNSLEWFVKKVQDRIVLCTLRRFVVKSANKSRIDAFIKVSQGWPLADSPLKLVSLKNSDHYTKGASLSLVCKVEKMANSLDARIRQNLSSFADAVKNILKEQMHLELQADSENLPKPKPKPKSKTKSKPKPKSNPTPNPNPNPNPNPNPNQNPNPNPNQNPNPNPNPNPNPNQNPNPNPNQNPNPNQNPNPNPTPTPTPTPTPNPNPNQNPNPNPTPTPTPTPTPNPNPNPNPKPNPNPNPNPNPKPNPNPNPNPNKNPNPNPNPNPTPNPNPKPNPNPNKNPNPNPNKNPNPNPNPTPNPNPNPKPNQNPNPNPKPNQNPNPNPNQNPNPNPNQNPNPNPNPIPNPNPNPNPNQGCLQKFE 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13454898 13465763 + CmaCh14G019040.1 Cma14g01904 308887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01904 981 MobiDBLite consensus disorder prediction 725 981 - -
Cma14g01904 981 Pfam Zinc finger, C3HC4 type (RING finger) 239 277 - -
Cma14g01904 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 309 IPR013083 -
Cma14g01904 981 SUPERFAMILY RING/U-box 235 291 - -
Cma14g01904 981 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN 386 481 - -
Cma14g01904 981 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN 485 730 - -
Cma14g01904 981 ProSitePatterns Zinc finger RING-type signature. 255 264 IPR017907 -
Cma14g01904 981 Coils Coil 443 470 - -
Cma14g01904 981 SMART ring_2 240 277 IPR001841 -
Cma14g01904 981 MobiDBLite consensus disorder prediction 751 971 - -
Cma14g01904 981 ProSiteProfiles Zinc finger RING-type profile. 240 278 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01904 - - - cmos:111432106 595.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01207 Cma-Chr6:8056363 Cma14g01904 Cma-Chr14:13454898 4.93E-102 dispersed
Cma14g00389 Cma-Chr14:1763799 Cma14g01904 Cma-Chr14:13454898 8.77E-06 dispersed
Cma14g01904 Cma-Chr14:13454898 Cma07g00074 Cma-Chr7:432781 2.21E-06 dispersed
Cma14g01904 Cma-Chr14:13454898 Cma19g00169 Cma-Chr19:1130660 2.69E-26 wgd
Cma14g01904 Cma-Chr14:13454898 Cma02g01674 Cma-Chr2:9452722 5.69E-25 wgd
Cma14g01904 Cma-Chr14:13454898 Cma06g01206 Cma-Chr6:8046742 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g943 . . . . . . . . . . . Cma14g01904 Car06g01058 . Sed02g1522 Cpe08g00408 Cpe03g01604 Bhi01g00204 Tan10g0502 Cmetu06g0591 . Hepe05g1772 . Lcy11g1787 . . . . . . . . . . . . . . Cme06g00371 . . . . . . . . . Cmo06g01242 Cmo14g01958 . . . . . . . . . . . . . Cla05g00335 Cam05g0367 Cec05g0371 Cco05g0372 Clacu05g0362 Cmu05g0347 Cre05g0411 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013959 0 1 0 0 0 1 1 1 1 0 1 1 2 1 1 2 1 0 2 1 0 1 1 1 1 0 0 2 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01904 Cma_Chr14 FPKM 6.947177 7.196689 6.755861 6.061075 6.176516 6.391706 6.233475 10.433105 9.572388 9.917977