Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01953 ATGATTTTGACCCAGAAATTATTTGTAATCAAAATCCCTTCAAACCTACCCACCACTCCGAAACCCAGTCTCAAATTCAACCAAAAACCATTTCCCCTCTTAGAGAACAGCAAAAAATGGACAGAGCTCAAAGAATTTCAGCAACTTCATGCACAGATGGTCGTTACAGGCTTCATCCACCATACCCCATCACTCAACAAGCTCATTGCCCATGTCCTCTCGATGGGCTCGCTCGGAGTCGCCTATGCTTATTCGGTTTTTACTCACACTCTAGAGTTGGATATACTTACTTGGAATACCATGTTGAGAGGCTTTGTGAATTCCGACATGCCGAGAAGGGCGCTCCGAAGTTACATTGAGATGCTTCAATGGTCAAGGATTGTTCCTGATAGATTCACATTTCCTTCTCTGCTAAAGGGTTGCGCCCTTTCATTGGAGTTCAAAGTTGGGAAGGTTCTACATGGCCAGATCGTCAAGAATAGGCTTGGTTCAGACCTGTACATAGAAACCACATTGTTAAATATGTATGCCTCCTGTGGGGATTTGAACTCTGCGAGGTTCTTGTTTGAGAAAATGGGTCATAGAAACAAAGTGGTGTGGACTTCTATGATTAGTGGCTATACGAGAAACCATTGTCCTAAGGAGGCTTTGGTTATGTATGAGAAAATGGTGGAAGATGGGTTTAGCCCTGATGAAGTTACCATGGCAACGCTCGTATCGGCTTCGGCTGAGTTGAAAGATTTGGGTGTTGGAATGAAGCTGCATTCTCGAATTCAGGAGATGGGTATGAAGATTTGTGCTGTTCTAGGAAGTGCTTTGGTTGATATGTATGCTAAATGTGGGGATCTAAAAACTGCAAGGCAAGTGTTTGATAATATGTCTGAGAGAAATGTATATACCTTCTCGGCTTTGATTTTTGGTTATGTCAAGAACAATAGAAGCACGGAGGCTTTGCAGCTATTCAGGGAAATGGTTGGCGCCTCAAACGTGCATCCAAATGAAGTCACGATTTTAGCCGTTGTTTCCGCATGTGCTCAATTGGGTGACTTAGAAACAGGAAGATGGATTCATGACTATATTACGAGGACCGAACAGGATTGTTCAGTTAGTTTGAGTAACGCATTGATCGACATGTACTCAAAGTGTGGAGAAATAGATGCTGCCAAGAGAATCTTTGATAGCATGTCAAAAAGAGATTTGATCTCTTGGAATTCTTTGGTGAACGGTCTCGCTCTACACGGCCTCGGCAGGGAGGCTCTCACTCGGTTGCGCCTAATGCAGATGACAGACTTGCAGCCAGATGAAATAACTTTCATTGGGTTACTGACTGCCTGCAGCCACGCAGGATTAGTTCAAGAGGGCAAGAAGCTATTCCATGAAATGGAAGCATTATATGGAATAAGACCCAAGTTGGAGCATTACGGGTGCATGGTAGATCTTTTATGCAGAGCGGGACATCTGGTCGAAGCTCGGGAATTTATCCAAGCAATGCCTTTACAACCAAATGGTGCAATATGGGGCGCTATGCTCGGTGCTTGCAGAGTATACAATGATCTTGAGCTCGGCGAGGAATCTGCGAGATGCCTGCTAGAACTGGAACCAACAAATGATGGAGTTTACATTTTGCTATCAAACATTTATGCAAGAAGGAAAATGTGGAATGAAGTGAAAAAAGTTCGAGAATTGATGAACGAGAAAGGAATTCAGAAAACACCTGGTTACAGTTCGGTTGTCATCGATAACATCACCCATTCGTTTCTGGCTGGAGATTGTTCTCACCCAGAAATAACTGAAATATTTAAAATGCTTAGACAAGTTAGAGAGAAGCTGAAACAAGCAGGCTATGTTGCAGATATCTCAGAAGTATTACTCAACATTGATGATAATAAGAAGGAAGAATCAGTTTCTCAACATAGTGAAAAACTAGCTTTATGCTATGGCTTATTGAAATCTAAGCCAGGGAGGAAAATTGTTATCCTGAAAAACCTTAGGGTCTGCTCAGACTGTCATACTATGATAAAACTCATCTCGAAGATTTACCGAAGGCAGATAACGCTACGAGATCGAATCCGTTTCCACCACTTCAAAGACGGCGTCTGTTCTTGCAGAGATTATTGGTGA 2121 42.62 MILTQKLFVIKIPSNLPTTPKPSLKFNQKPFPLLENSKKWTELKEFQQLHAQMVVTGFIHHTPSLNKLIAHVLSMGSLGVAYAYSVFTHTLELDILTWNTMLRGFVNSDMPRRALRSYIEMLQWSRIVPDRFTFPSLLKGCALSLEFKVGKVLHGQIVKNRLGSDLYIETTLLNMYASCGDLNSARFLFEKMGHRNKVVWTSMISGYTRNHCPKEALVMYEKMVEDGFSPDEVTMATLVSASAELKDLGVGMKLHSRIQEMGMKICAVLGSALVDMYAKCGDLKTARQVFDNMSERNVYTFSALIFGYVKNNRSTEALQLFREMVGASNVHPNEVTILAVVSACAQLGDLETGRWIHDYITRTEQDCSVSLSNALIDMYSKCGEIDAAKRIFDSMSKRDLISWNSLVNGLALHGLGREALTRLRLMQMTDLQPDEITFIGLLTACSHAGLVQEGKKLFHEMEALYGIRPKLEHYGCMVDLLCRAGHLVEAREFIQAMPLQPNGAIWGAMLGACRVYNDLELGEESARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGYSSVVIDNITHSFLAGDCSHPEITEIFKMLRQVREKLKQAGYVADISEVLLNIDDNKKEESVSQHSEKLALCYGLLKSKPGRKIVILKNLRVCSDCHTMIKLISKIYRRQITLRDRIRFHHFKDGVCSCRDYW 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13741588 13743708 + CmaCh14G019530.1 Cma14g01953 308936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01953 706 Gene3D Tetratricopeptide repeat domain 359 428 IPR011990 GO:0005515
Cma14g01953 706 PANTHER - 29 227 - -
Cma14g01953 706 PANTHER - 227 325 - -
Cma14g01953 706 TIGRFAM PPR: pentatricopeptide repeat domain 299 333 IPR002885 -
Cma14g01953 706 TIGRFAM PPR: pentatricopeptide repeat domain 272 298 IPR002885 -
Cma14g01953 706 TIGRFAM PPR: pentatricopeptide repeat domain 401 435 IPR002885 -
Cma14g01953 706 TIGRFAM PPR: pentatricopeptide repeat domain 373 399 IPR002885 -
Cma14g01953 706 TIGRFAM PPR: pentatricopeptide repeat domain 198 232 IPR002885 -
Cma14g01953 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Cma14g01953 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 327 IPR002885 -
Cma14g01953 706 Gene3D Tetratricopeptide repeat domain 439 613 IPR011990 GO:0005515
Cma14g01953 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 302 700 - -
Cma14g01953 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 227 - -
Cma14g01953 706 Pfam PPR repeat 170 193 IPR002885 -
Cma14g01953 706 Pfam PPR repeat 473 497 IPR002885 -
Cma14g01953 706 Pfam PPR repeat 437 462 IPR002885 -
Cma14g01953 706 Pfam PPR repeat 401 427 IPR002885 -
Cma14g01953 706 Pfam PPR repeat 373 399 IPR002885 -
Cma14g01953 706 Gene3D Tetratricopeptide repeat domain 33 151 IPR011990 GO:0005515
Cma14g01953 706 SUPERFAMILY TPR-like 266 399 IPR011990 GO:0005515
Cma14g01953 706 Gene3D Tetratricopeptide repeat domain 246 358 IPR011990 GO:0005515
Cma14g01953 706 Gene3D Tetratricopeptide repeat domain 152 245 IPR011990 GO:0005515
Cma14g01953 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 129 IPR002885 -
Cma14g01953 706 PANTHER - 302 700 - -
Cma14g01953 706 Pfam E+ motif 583 604 IPR046849 -
Cma14g01953 706 Pfam E motif 516 577 IPR046848 -
Cma14g01953 706 Pfam DYW family of nucleic acid deaminases 614 706 IPR032867 GO:0008270
Cma14g01953 706 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 227 325 - -
Cma14g01953 706 Pfam PPR repeat family 296 345 IPR002885 -
Cma14g01953 706 Pfam PPR repeat family 196 241 IPR002885 -
Cma14g01953 706 Pfam PPR repeat family 94 142 IPR002885 -
Cma14g01953 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01953 - - - cmo:103483399 1150.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01149 Cma-Chr5:8944672 Cma14g01953 Cma-Chr14:13741588 3.00E-139 dispersed
Cma14g01953 Cma-Chr14:13741588 Cma17g00868 Cma-Chr17:6671198 0 dispersed
Cma14g01953 Cma-Chr14:13741588 Cma10g00565 Cma-Chr10:2591943 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g926 . . . . . . . . . . . Cma14g01953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000224 3 8 4 3 3 4 6 4 4 5 6 3 5 6 3 6 3 4 5 3 5 3 4 3 4 6 4 0 3 4 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma14g01953 Cma_Chr14 FPKM 0.677378 0.781775 1.301209 1.984453 8.059581 8.149755 8.246016 1.369784 1.678222 1.700102