Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01956 ATGGCGGGCTTAGATTTGGGCTCTGCATCTAACTTTGTCCATCAACTTCAGCACCGTTCCGTGGATCTCCACTTGCAGCGGCCGCCGGACGGAGACGACGGTCCAGACCAGTTCCACGGCCTTGATGACGAGCACCAACCGAACTCTGGTGGCGAAATCGTGGCCCGGCGGTCAAGGGGTCGACCGCCTGGGTCTAAAAATAAACCGAAACCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTTCGTGCTCACATCTTGGAAGTCAACACCGGTTGCGATGTCTTTGACTCGGTGGCTACTTATGCCAGGAAACGCCAACGGGGGATCTGCATCTTGAGCGGCACCGGCGTCGTCACCAACGTTACTTTAAGGCAACCCGCGTCCGGCGGCGCCGTTCTCACGCTTCCCGGAAGGTTTGAGATATTGTCTTTGTCGGGATCGTTTTTGCCGCCGCCGGCTCCGCCAGGAGCGACGAGTTTGAGTATCTTCCTTGGCGGTGGACAAGGGCAGATTGTGGGAGGGAATGTTGCTGGCTCCTTGATTGCTTCTGGACCGGTGACTGTTATTGTGTCGTCGTTTACCAATGTTGCGTACGAGAGGCTGCCGTTGGATGAGGAGGAACCGTCCAACGGTGGTGGAGGGAGCCTTAGCAACCCGTTTCCGGACCCGTCGGCGGGGTTGCCGTTCCTTAATCTGCCATTGAACATGCCGGGGAATCAAAATCAGCTGCCGGTGGAGGGATGGAACTCCGGTGGGGGAGCATCTTATTGA 777 56.89 MAGLDLGSASNFVHQLQHRSVDLHLQRPPDGDDGPDQFHGLDDEHQPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNTGCDVFDSVATYARKRQRGICILSGTGVVTNVTLRQPASGGAVLTLPGRFEILSLSGSFLPPPAPPGATSLSIFLGGGQGQIVGGNVAGSLIASGPVTVIVSSFTNVAYERLPLDEEEPSNGGGGSLSNPFPDPSAGLPFLNLPLNMPGNQNQLPVEGWNSGGGASY 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13756219 13757337 - CmaCh14G019560.1 Cma14g01956 308939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01956 258 MobiDBLite consensus disorder prediction 24 50 - -
Cma14g01956 258 CDD DUF296 84 195 IPR005175 -
Cma14g01956 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 208 - -
Cma14g01956 258 Gene3D - 83 211 - -
Cma14g01956 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 253 - -
Cma14g01956 258 MobiDBLite consensus disorder prediction 24 73 - -
Cma14g01956 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 253 IPR014476 GO:0003680
Cma14g01956 258 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Cma14g01956 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01607 Cma-Chr2:9151665 Cma14g01956 Cma-Chr14:13756219 5.00E-97 dispersed
Cma14g01956 Cma-Chr14:13756219 Cma19g00242 Cma-Chr19:1713777 3.97E-92 dispersed
Cma14g01956 Cma-Chr14:13756219 Cma17g00057 Cma-Chr17:253494 1.64E-98 wgd
Cma14g01956 Cma-Chr14:13756219 Cma08g00980 Cma-Chr8:6130529 7.21E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01956 - - csv:101220959 416.772