Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01967 ATGGCAGTGATTCATAGCCGTTGGATCCTTATTGTTCTTGTTGTTCTTAATTTTCCGGGCGCCATTTTTGGTTATTCCGAAAAAGAATTGAAAAATTGGTGTAGCCAAACACCATATCCAGCTCCATGCGAGCAATTTATCAAAGCCAAAGCCACCGCCAAACATTCCCCAATCGCCACTAAATCCCATTTCCTTAAACTCTTGGTCGAAACGGCACTCGACGGCGCCGTTTCGGCCCAAAAAACCGCGCTGTCTCTCGGCCCAAAATGCCACAATGGCCGAGAAAAATCAGCATTGACCGACTGCGTTGACCTTTACAATCAAATCATCTCCCGCCTCAACCGCTCCGCCGACCGCTGCTCCTCCGTCGACGCCCAGACTTGGCTCAGCGCCTCCCTCACCGCCCTCGACACCTGCCGGAACAGCCTCCAGGAGCTCGGGGTTTCGGCTTTCGGCTACCCTTTGACGAGCAATAATGTTTCCAAGCTCATTAGCGATGGGTTGTCTGTGAATAAGCCGGCGTCACCCCAGGGGTTTGAACCAACTATGGCGGAGGGGTTTCCGACGTGGGTTAGGCCCGGTGACCGGAAACTGCTGCAGTCGGGGTCTCCGAGTGCGGATGTGGTGGTGGCGAAGGACGGGTCTGGGAATTTTAAGACGGTGAAGGAGGCGGTCGCCGCTGCGAAAGGCGGCGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGTGAAAACCTTGAGATTAATGCTAAGAATGTTATGTTGATCGGCGACGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGCGGTTTCACCACGTTTAGATCCGCCACCGTGGCCGTTGATGGAGACGGCTTTATCGCGCGAGACATAACCTTCAGAAACACTGCCGGAGCGGCGAACCACCAGGCGGTGGCGCTCCGATCGGGGTCTGACCTGTCGGTCTTCTATCGATGTGGCTTCGAAGGCTATCAAGATACTCTCTACGTCTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACTGTCGATTTCATCTTCGGCAACGCCGCCGTCGTACTCCAAGATTGCAACATCATCGCCCGCGATCCTCCGAATAGGACTATCACCGTCACCGCCCAGGGCCGATCAGATCCGAATCAGAACACCGGAATCTCGATCCACAATTCCCGAATCACGTCCGCCGGCGGCCTCAGCGGCGTCAAAGCCTATTTAGGTCGGCCGTGGAGGCAGTACTCGCGGACAGTTATTATGAAATCGTCGATCGGCGGATTCATCAGTCCGGCCGGGTGGCTAGAATGGAGCGGTAATTTTGCCCTAAATACACTCTATTACGGCGAATATATGAATACCGGTCCGGGAGCTTCGACGGCGAATCGAGTGAAATGGAAGGGCTATCGTGTAATTACCAGTGCGACGGAGGCCTCCAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTACCGAGTACCGGCGTGCCTTTCACCCCCGGCCTCTAG 1530 54.38 MAVIHSRWILIVLVVLNFPGAIFGYSEKELKNWCSQTPYPAPCEQFIKAKATAKHSPIATKSHFLKLLVETALDGAVSAQKTALSLGPKCHNGREKSALTDCVDLYNQIISRLNRSADRCSSVDAQTWLSASLTALDTCRNSLQELGVSAFGYPLTSNNVSKLISDGLSVNKPASPQGFEPTMAEGFPTWVRPGDRKLLQSGSPSADVVVAKDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENLEINAKNVMLIGDGIGKTVITGSRSVGGGFTTFRSATVAVDGDGFIARDITFRNTAGAANHQAVALRSGSDLSVFYRCGFEGYQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVLQDCNIIARDPPNRTITVTAQGRSDPNQNTGISIHNSRITSAGGLSGVKAYLGRPWRQYSRTVIMKSSIGGFISPAGWLEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYRVITSATEASKFTVGNFIAGGSWLPSTGVPFTPGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13840381 13843785 - CmaCh14G019670.1 Cma14g01967 308950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01967 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 171 IPR035513 -
Cma14g01967 509 SMART PMEI_2 25 170 IPR006501 GO:0004857
Cma14g01967 509 Gene3D - 202 509 IPR012334 -
Cma14g01967 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599|GO:0042545
Cma14g01967 509 Pfam Plant invertase/pectin methylesterase inhibitor 30 167 IPR006501 GO:0004857
Cma14g01967 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 159 IPR006501 GO:0004857
Cma14g01967 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 172 IPR035513 -
Cma14g01967 509 CDD PMEI-like_3 33 175 - -
Cma14g01967 509 PANTHER PECTINESTERASE 11 508 - -
Cma14g01967 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cma14g01967 509 PANTHER PECTINESTERASE 11 508 - -
Cma14g01967 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01147 Cma-Chr6:7742847 Cma14g01967 Cma-Chr14:13840381 0 dispersed
Cma14g01967 Cma-Chr14:13840381 Cma02g01117 Cma-Chr2:6634770 9.06E-144 dispersed
Cma02g00988 Cma-Chr2:5875752 Cma14g01967 Cma-Chr14:13840381 0 transposed
Cma04g00334 Cma-Chr4:1639073 Cma14g01967 Cma-Chr14:13840381 0 transposed
Cma15g00967 Cma-Chr15:5369571 Cma14g01967 Cma-Chr14:13840381 8.39E-51 transposed
Cma16g00836 Cma-Chr16:4743264 Cma14g01967 Cma-Chr14:13840381 7.32E-174 transposed
Cma14g01967 Cma-Chr14:13840381 Cma06g01146 Cma-Chr6:7721885 1.93E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01967 K01051 - csv:101217552 872.463