Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01978 ATGATTATTAATTTCTTGGTATTGACTAATCTTCTTCTTCAAAGCAGGAATGAGCATCTAAATCCTTCACCTAAAAAAAGAACAGAAAAAAAAAAACCTCCAAAAGATTCGAAGTTCAAAGCGATGGAGGAGAGAGAAGCCATAAATACAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTACCACGTAGCTCCGAGAACCGAGAACCCGCCGCCGGCTAGCGGCGGCGGTGGTGGTTCGCCAACCGTCGCCGCCTCGCCGGTCAGTGTGGGGCTACCCGGAAGTGAAACCACAGGGAAAAAGAAGCGGGGGAGACCTAGAAAGTACGGTCCAGATGGAACGGTAACCATGGCATTGACACCATTGCCGCTTTCTTCCTCAGCTCCGGGGGCCGGCGGCTTCTCCATCACGAAGCGGGGGAAGGGCCGGCTCGGCGGCTCTGAATTCAAGCACCACAAGAAAATGGGAATGGAATATATAGGTGAATGGAATGCGTGTTCTGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGTCCTCGAGCGATCTGTATTCTTTCTGCGAATGGTGTAATTTCGAATGTCACTCTCCGGCAGCCCGATTCTTCGGGTGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCATTGTCTGGATCGTTCATGCCTACTGAAAATCAAGGATCGAGAAGCAGGTCAGGTGGGATGAGTGTCTCCTTGGCGAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCAGGTTTGCTCGTAGCTGCAGGCCCTGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGTAGCCAACAGGAGCCGAAAGTAAAGAAACAGAAGCCTGAATCAGTACCAGCTGCAGCCCCTGTTGCAGCCCCGACCACAACACCAACCACCACCGTGCCGACTTCCAATGCCGATACAGACGACAGTTTAAACGGTAACGGTCAACCAAATCCCGGGTCCCTAAAACCGGCCAGTTTTGCTCCTTCGGCTTTCCAGAGAGACAATTGGGGTGCCAATGCTGCCGTGCGTTCTTCCTTGCAGGAGACGAGAAATTCGCCCACCGACATCAATATATCGCTCCCGGGCTAA 1119 51.65 MIINFLVLTNLLLQSRNEHLNPSPKKRTEKKKPPKDSKFKAMEEREAINTGVTVIGAEAPSAYHVAPRTENPPPASGGGGGSPTVAASPVSVGLPGSETTGKKKRGRPRKYGPDGTVTMALTPLPLSSSAPGAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGSRSRSGGMSVSLASPDGRVVGGGVAGLLVAAGPVQVVVGSFLPTSSQQEPKVKKQKPESVPAAAPVAAPTTTPTTTVPTSNADTDDSLNGNGQPNPGSLKPASFAPSAFQRDNWGANAAVRSSLQETRNSPTDINISLPG 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13908339 13913650 - CmaCh14G019780.1 Cma14g01978 308961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01978 372 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 282 - -
Cma14g01978 372 CDD DUF296 170 250 IPR005175 -
Cma14g01978 372 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 42 371 IPR039605 GO:0003680
Cma14g01978 372 Gene3D - 161 290 - -
Cma14g01978 372 MobiDBLite consensus disorder prediction 18 43 - -
Cma14g01978 372 MobiDBLite consensus disorder prediction 300 332 - -
Cma14g01978 372 ProSiteProfiles PPC domain profile profile. 155 294 IPR005175 -
Cma14g01978 372 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 42 371 - -
Cma14g01978 372 MobiDBLite consensus disorder prediction 20 43 - -
Cma14g01978 372 MobiDBLite consensus disorder prediction 353 372 - -
Cma14g01978 372 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 273 IPR005175 -
Cma14g01978 372 MobiDBLite consensus disorder prediction 277 343 - -
Cma14g01978 372 MobiDBLite consensus disorder prediction 64 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01510 Cma-Chr2:8610196 Cma14g01978 Cma-Chr14:13908339 2.76E-83 dispersed
Cma06g01133 Cma-Chr6:7636265 Cma14g01978 Cma-Chr14:13908339 5.26E-142 dispersed
Cma14g01978 Cma-Chr14:13908339 Cma15g01381 Cma-Chr15:8645120 8.08E-70 dispersed
Cma14g01978 Cma-Chr14:13908339 Cma15g01173 Cma-Chr15:7425014 1.83E-87 wgd
Cma14g01978 Cma-Chr14:13908339 Cma16g01035 Cma-Chr16:7958211 1.48E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01978 - - csv:101212918 499.204