Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g01981 | ATGAAAGAACGGCAAGAAAGCGAGGCCGGAATGAGCTCAAGGCACGGCGGTGGAGGTTGCAAGGAGGGCAATGGTGGTAGTAGCAGCAATGGCAGCGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGAAGGAAGTGTACACCCGAGTGTATATTTGCACCCTACTTTGACTCTGAACAAGGCACGACACATTTTGCAGCCGTGCACAAAGTGTTCGGAGCCAGTAATGTGTCGAAGCTACTTCTGCATATTCCTGAACACAAGCGCCTCGATGCAGCTATAACTATATGCTACGAGGCACAAGCTCGTGTTAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGCTGCGAGGTTGCAAGTACAGCTCTCATACTTGCAAGCGTACCTAGCAGCATCTGAGCTTTCAAGAACAGCACCGCATCCACAGGCACAGCCACAAGATCTGGTCAAGCTAACAATACCCTCAATTGTAAACCTTCCATTAGATTGCCCTTCTTTGCCTGCTGCTGCATCAGATCTTTCACTACTTCTCGATCCTGTGGAGCAAGCTTCGCCGGCAAAGTTGCAGTCTCCATTGGAATTCTGTCAAATTAGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAATTGTCCAAAAACAACTCTCCACGATGCAACGCATTGGTGCCTCGCTATTTCCCTACGTCCCTAAATGA | 723 | 49.24 | MKERQESEAGMSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVQLSYLQAYLAASELSRTAPHPQAQPQDLVKLTIPSIVNLPLDCPSLPAAASDLSLLLDPVEQASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPK | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 13925865 | 13926815 | + | CmaCh14G019810.1 | Cma14g01981 | 308964 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g01981 | 240 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 11 | 197 | - | - | |
Cma14g01981 | 240 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 133 | IPR004883 | - | |
Cma14g01981 | 240 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cma14g01981 | 240 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 18 | 11 | 197 | - | - | |
Cma14g01981 | 240 | ProSiteProfiles | LOB domain profile. | 34 | 136 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma14g01981 | Cma-Chr14:13925865 | Cma17g00029 | Cma-Chr17:126154 | 2.51E-56 | dispersed | |
Cma14g01981 | Cma-Chr14:13925865 | Cma17g00028 | Cma-Chr17:119807 | 4.58E-63 | wgd | |
Cma14g01981 | Cma-Chr14:13925865 | Cma08g00953 | Cma-Chr8:5951982 | 4.69E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36341 | PF03195 | LOB | 1.10E-36 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g01981 | K21994 | - | csv:101216934 | 343.199 |