Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01981 ATGAAAGAACGGCAAGAAAGCGAGGCCGGAATGAGCTCAAGGCACGGCGGTGGAGGTTGCAAGGAGGGCAATGGTGGTAGTAGCAGCAATGGCAGCGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGAAGGAAGTGTACACCCGAGTGTATATTTGCACCCTACTTTGACTCTGAACAAGGCACGACACATTTTGCAGCCGTGCACAAAGTGTTCGGAGCCAGTAATGTGTCGAAGCTACTTCTGCATATTCCTGAACACAAGCGCCTCGATGCAGCTATAACTATATGCTACGAGGCACAAGCTCGTGTTAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTTCAACAACAGGCTGCGAGGTTGCAAGTACAGCTCTCATACTTGCAAGCGTACCTAGCAGCATCTGAGCTTTCAAGAACAGCACCGCATCCACAGGCACAGCCACAAGATCTGGTCAAGCTAACAATACCCTCAATTGTAAACCTTCCATTAGATTGCCCTTCTTTGCCTGCTGCTGCATCAGATCTTTCACTACTTCTCGATCCTGTGGAGCAAGCTTCGCCGGCAAAGTTGCAGTCTCCATTGGAATTCTGTCAAATTAGAAGCAACAATTTCCCATCCATGGGCAGCATTGATCAACAAATTGTCCAAAAACAACTCTCCACGATGCAACGCATTGGTGCCTCGCTATTTCCCTACGTCCCTAAATGA 723 49.24 MKERQESEAGMSSRHGGGGCKEGNGGSSSNGSGGPCGACKFLRRKCTPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVQLSYLQAYLAASELSRTAPHPQAQPQDLVKLTIPSIVNLPLDCPSLPAAASDLSLLLDPVEQASPAKLQSPLEFCQIRSNNFPSMGSIDQQIVQKQLSTMQRIGASLFPYVPK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13925865 13926815 + CmaCh14G019810.1 Cma14g01981 308964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01981 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 197 - -
Cma14g01981 240 Pfam Lateral organ boundaries (LOB) domain 35 133 IPR004883 -
Cma14g01981 240 MobiDBLite consensus disorder prediction 1 33 - -
Cma14g01981 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 11 197 - -
Cma14g01981 240 ProSiteProfiles LOB domain profile. 34 136 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01981 Cma-Chr14:13925865 Cma17g00029 Cma-Chr17:126154 2.51E-56 dispersed
Cma14g01981 Cma-Chr14:13925865 Cma17g00028 Cma-Chr17:119807 4.58E-63 wgd
Cma14g01981 Cma-Chr14:13925865 Cma08g00953 Cma-Chr8:5951982 4.69E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36341 PF03195 LOB 1.10E-36 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01981 K21994 - csv:101216934 343.199