Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01990 ATGTCTGTTACTTTGCACACGAATCTCGGAGACATCAAGTGCGAGATTTCTTGCGATGAAGTCCCGAAGTCTGCCGAGAACTTTTTGGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCACCGCAACATCAAAGGCTTTATGATACAAGGTGGAGATCCAACAGGCACGGGAAAAGGGGGAGCCAGCATATGGGGTAAAAAGTTTAATGACGAGATAAGGGAGTCACTCAAGCACAACGCAAGAGGGATATTATCAATGGCTAATAGTGGAGCAAATACGAATGGAAGCCAGTTTTTTATAACATATGCAAAGCAGCCACATTTAAATGGATTATATACTGTGTTCGGCAGAGTGATTCATGGGTTTGAAGTACTTGACATCATGGAAAAGACTCAAACTGGACCGGGAGATCGTCCTCTCGCAGAGATCAGGCTCAATCGGGTGACGATACATGCTAATCCTCTTGCAGGCTAA 483 44.51 MSVTLHTNLGDIKCEISCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGASIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13972262 13974936 - CmaCh14G019900.1 Cma14g01990 308973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01990 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Cma14g01990 160 Gene3D - 1 160 IPR029000 -
Cma14g01990 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755
Cma14g01990 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Cma14g01990 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413|GO:0003755
Cma14g01990 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413|GO:0003755
Cma14g01990 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Cma14g01990 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Cma14g01990 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Cma14g01990 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Cma14g01990 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Cma14g01990 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Cma14g01990 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 159 IPR044666 -
Cma14g01990 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 2 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00917 Cma-Chr3:6629564 Cma14g01990 Cma-Chr14:13972262 1.55E-57 dispersed
Cma14g01990 Cma-Chr14:13972262 Cma08g00315 Cma-Chr8:1794455 1.35E-37 dispersed
Cma01g00480 Cma-Chr1:2430162 Cma14g01990 Cma-Chr14:13972262 8.34E-10 transposed
Cma12g00786 Cma-Chr12:5365522 Cma14g01990 Cma-Chr14:13972262 1.73E-50 transposed
Cma14g01990 Cma-Chr14:13972262 Cma06g01124 Cma-Chr6:7568663 5.63E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01990 K12734 - csv:101211474 321.627