Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g01999 ATGGTGAGAGGGAAAACTGAGATGAGGCGAATCGAGAATGCGACGAGTCGTCAAGTTACGTTCTCGAAGCGTCGGAATGGGTTGCTGAAGAAGGCGTTTGAGCTCTCCGTTCTTTGTGATGCTGAACTTGCTCTTATCATTTGCTCTTCTACTGGAAAGCTTTATGAATTTGCTAGCTCCAGCTTGCAGGCCACAGTGGGGCGATATCTAAGGCATACCAAAGCAACTCATCATCTTCAACCTCCATCTCATCGACACGAGTTACACCTGGTTCAGAACGAGGCTACAAGTTTGTTGGACGAGATCGAGTCACTCGAGGTTTCAAAGAGGAAATTGTTGGGAGAAGGTCTAGGATCAAGCTCCTATGAAGAACTTCAACAAATAGAAAAGCAGCTAGAGAGGAGCTTAGCTCATGAGAAATATTTGACTGCTGAAAATGCAAAGCTTGCTAAAAAGTGTTTTGTCCAACACGAGCTTCGACAATCATCAGCTCAAGTTGGTGAAGTTTCAACTCATCTAGAGCATAACTCGATTTTCGACATAGAAACAGAGCTGTTCATTGGACCTCCCAAGTCGATCAATCTACAGTTCTCTCCGTTCTTGTGTTCATCGACAATGGCGCTGAAGAAAGGATCGGTGTCTGGTTTTGCTAAGCACGAGGATGAAGGAGGTAATGGTGGTATCGGAGGATATAGGTTAGTTTTGGCTGTTCTCGTCGCTCTCTCTGTTCTTGCGTCCTTGCCTTTTGTCGTCGTCAGCGACTTCCACACTATTGGTGAAGGGGTTATTTCAAGTAGTCCAAGCAAAGGGCTGCAGGTAATTGATGATATTCCAGTCAAAACAAACAATACTGCAACTATTGGTGTTAATTCTTCGGTGAACAATAATTTTACCTTATCTTTGAGTTTGGTTGGGGATTCCTCAGTTGATGCGATTTCCATGATAGCAAGAGAAGAACGACACGAAAATCAATTGCTGGAGTTGGACTTGGATCCGCCGAATGAAGATACCATTGTAAAACTTGAGAATGCAAATATGCAGGCCTCTGAACTAGTTGACTCCTCGATCATTGGAAAATACAGTAAATGGAAGAAAGAAAACCAGAACAAGAATCAAGATTCTACTATACGTCTAATGCGAGACCAGATTATTATGGCAAGAATATATTTGAGCATTTCGGAAAAGAAAAGGAAACATGATTTGGTTCAAGAGCTCCAAATTTGTCTTAAAAGGAGTCGTGGTGTACTAGGAGAGGCAAATATTGATGCTGAGTTGCATTACAGTGCGCCCAAGAAAATAAAAGCTATGGCTGATGTTCTTTCAAAGGCGAGAGATCAACTGTTTGATTGCAAGTTGGTGACCAGGAAGCTGAGAGCAATGCTTCTAACCGAAGAAGAAAAGGTTAGAAGGTTGAAAAGGCAAAATACATTTCTCATTCAATTGGGAGTTAAGGGTATTCCAGGCGGTATTCGCTGCCTGTCCTTGCGCCTCACCATCGATTACTACCTTCTTCCTCCGGAGAGGAGAAATTTCCCTAGAAGTGAAAATTTGGAAGATCCAAGATTTCACCATTATGCTCTCTCCACTGACAACGTCTTGGCTGCCGCAGTAGTTGTGAACTCAACCGTAATGAATGCTAAGGATTCTTCAAAACATGTATTCCACCTGGTAACTGATAGTCTCAATTTTGGAGCATTGAAAATGTGGTTTCTCTTAAATCCTCCTGAAGAGGCTACGATCCACGTTGAAAATTTAGATGAACTCAAGTGGCTGAACTCATCCTATTGCCCAGTACTCCGCCAGCTTAATTCTGCAGCAATGAGAGAGTATTATTTCAAGGCTGGACATTCTACCACTCGGTCATCTAGTGCTTCTAATTTGAAGTACAGGAACCCAAAATATCTCTCAATGCTAAATCATCTGAGGTTCTATCTACCTCAAATTTTTCCCGAGTTAGATAAAATTCTATTTCTGGACGATGACATTGTTGTCCAGAAAGATTTGACTGGATTGTGGCTTGTAGATCTTGAGGGAAAAGTCAATGGTGCCGTGGAAACCTGTGTTGAGAATTTTCATCGTTTTGACAAGTACCTTAACTTCTCAAACTCTTTTATCGCTAGAGAATTCGACCCAAATGCATGCGGTTGGGCATATGGAATGAATATATTTGATCTCAAGGAGTGGAAAAAGAGAAATCTCACTGGCGTATATCATACATGGCAGAACTTGAATGAAGATAGGCTGCTTTGGAAGCTGGGTACCTTGCCACCAGGTTTGATGACATTTTATGGGCTGACATATTCCCTCAATAAGTCTTGGCATGTGCTTGGATTGGGTTACAATCCAAGTATCAACCCATCAGAGATAGAAAATGCAGCTGTTATTCACTATAATGGCAACATGAAACCTTGGATGGAGATGGCAATGACGAAGTATCGCCCCTACTGGACAAAATATATTGACTACGACAATCCTTATCTTCGCCAGTGCAACTTCGTTAAATGA 2505 42.04 MVRGKTEMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAELALIICSSTGKLYEFASSSLQATVGRYLRHTKATHHLQPPSHRHELHLVQNEATSLLDEIESLEVSKRKLLGEGLGSSSYEELQQIEKQLERSLAHEKYLTAENAKLAKKCFVQHELRQSSAQVGEVSTHLEHNSIFDIETELFIGPPKSINLQFSPFLCSSTMALKKGSVSGFAKHEDEGGNGGIGGYRLVLAVLVALSVLASLPFVVVSDFHTIGEGVISSSPSKGLQVIDDIPVKTNNTATIGVNSSVNNNFTLSLSLVGDSSVDAISMIAREERHENQLLELDLDPPNEDTIVKLENANMQASELVDSSIIGKYSKWKKENQNKNQDSTIRLMRDQIIMARIYLSISEKKRKHDLVQELQICLKRSRGVLGEANIDAELHYSAPKKIKAMADVLSKARDQLFDCKLVTRKLRAMLLTEEEKVRRLKRQNTFLIQLGVKGIPGGIRCLSLRLTIDYYLLPPERRNFPRSENLEDPRFHHYALSTDNVLAAAVVVNSTVMNAKDSSKHVFHLVTDSLNFGALKMWFLLNPPEEATIHVENLDELKWLNSSYCPVLRQLNSAAMREYYFKAGHSTTRSSSASNLKYRNPKYLSMLNHLRFYLPQIFPELDKILFLDDDIVVQKDLTGLWLVDLEGKVNGAVETCVENFHRFDKYLNFSNSFIAREFDPNACGWAYGMNIFDLKEWKKRNLTGVYHTWQNLNEDRLLWKLGTLPPGLMTFYGLTYSLNKSWHVLGLGYNPSINPSEIENAAVIHYNGNMKPWMEMAMTKYRPYWTKYIDYDNPYLRQCNFVK 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14020249 14028225 - CmaCh14G019990.1 Cma14g01999 308982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g01999 834 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Cma14g01999 834 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Cma14g01999 834 PANTHER POLYGALACTURONATE 4-ALPHA-GALACTURONOSYLTRANSFERASE 301 832 - -
Cma14g01999 834 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma14g01999 834 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma14g01999 834 Coils Coil 88 108 - -
Cma14g01999 834 Coils Coil 454 474 - -
Cma14g01999 834 CDD GT8_like_1 523 821 - -
Cma14g01999 834 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 524 826 IPR029044 -
Cma14g01999 834 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 301 832 IPR029993 GO:0047262
Cma14g01999 834 SUPERFAMILY Nucleotide-diphospho-sugar transferases 524 831 IPR029044 -
Cma14g01999 834 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Cma14g01999 834 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma14g01999 834 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma14g01999 834 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma14g01999 834 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma14g01999 834 Pfam Glycosyl transferase family 8 492 807 IPR002495 GO:0016757
Cma14g01999 834 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma14g01999 834 Pfam K-box region 84 137 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01118 Cma-Chr6:7535458 Cma14g01999 Cma-Chr14:14020249 9.60E-24 dispersed
Cma14g01999 Cma-Chr14:14020249 Cma17g00001 Cma-Chr17:1190 0 dispersed
Cma15g01396 Cma-Chr15:8798660 Cma14g01999 Cma-Chr14:14020249 8.22E-44 dispersed
Cma06g01119 Cma-Chr6:7537828 Cma14g01999 Cma-Chr14:14020249 0 transposed
Cma14g01999 Cma-Chr14:14020249 Cma15g01186 Cma-Chr15:7507315 1.75E-48 wgd
Cma14g01999 Cma-Chr14:14020249 Cma06g01116 Cma-Chr6:7524448 5.50E-81 wgd
Cma14g01999 Cma-Chr14:14020249 Cma08g00940 Cma-Chr8:5863045 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36343 PF01501 Glyco_transf_8 2.20E-92 CL0110 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g01999 K13648 - csv:101215256 949.118