Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g02014 ATGAGTTCCGCACCACGATTCGACTCTAGTAGTGCTCACGGCGGCGGCATCGGCGGCATCGGCGGTGGACACGGCACTCTTATGGCCTCCGGTGCAATTGCTCAGCCACGTCTTGTTACTCAGTCTTCTTTCTCCAAATCCATGTTCTCTTCCCCTAGACTCTCTCTCGCTCTTACTAATATCGATGGTTTCGGCGCCGGGGAGATGATTCCGGCGGATGTTGGTTTTGAGGAGAATGTGAGGAGGAGGAGAAGAGAGGAAGAGGCCACGGACAGCAGATCTGGTAGTGATAACATGGACGGCGGCGGTGGTTCTGGCGACGATCTGGACGCCGCTGTCGGCGATAATCCTAGGAAGAAGAAACGGTACCACCGTCACACTCCGCAACAAATCCAAGAACTCGAAGCTATGTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGATTGGAGCTCAGTAGAAGACTGTCTTTAGAAATAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACGCAACTGGAACGCCATGAAAACACATTACTAAGACACGAGAATGAGAAGCTCCGAACAGAGAATATGGCTATCCGAGAGGCGATGAGAAGCCCAATCTGCTCAAACTGCGGCGGACCGGCTATCATCGGAGAAATCTCCTTAGAAGAACAGCAACTCCGAATCGAAAACGCTCGATTGAAGGACGAATTGGACCGGGTGTGCGCTCTAGCCGGAAAATTCGTGGTGAGGCCGGTTCCGGTATCACCGCCGTTAGAGGAATATGGAGGTGGAATGATGATGATGGAGAGATGCGTGTATCTGGAAATGGCCTTGGCGGCCATGGATGAGCTTGTGAAAATGGCGAATGGGGAAGAACCACTGTGGATTGGAGAAAAACTGAACGAAGAAGAATATTCGAGAATGTTCAGCGGCGGTTGTTTTGGTGGCTTCGTTTCTGAAGCTTCCAGAGAATCTGCTCTCCTCTTCCTCCACTCTTCTGCTCTCCTCGACACTCTAATGGAGGCTAACCGGTGGGTGGAGATGTTTCCGAACTTGATTGCGACGGCGACCACCACCGACGTAATCTCCGGCGGAATGGGAGGAACCCGAAACGGCGCTCTTCAATTGATGCATGCGGAGCTTCAAATTCTATCTCCCATGGTTCCGGTGAGACAATTAAATTTCCTCCGCTTCTGCAAGCAGCATGCCGAAGGCGTTTGGACGGTTGTTGACGTCTCCATCGATCCCATTACCGATACTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGACATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGCCAAATTCATGAGCTGTACCGACCCCTTGTCCGCTCCGGCCTTGGCTTTGGCGCGCGACGGTGGATCGCCACCCTCCAGCGCCAATCTGAAGCCCTCGCTACCCTCATCTCCTCCCCATCTGACCATTCCGGGATATCCGCCGACGGACGGCGGAACATGGTGAAGCTAGCGCAGCGGATGACAGCAAATTTCTGCACAGGTGTATGCGCGTCGACGGTGTACAAATGGAACAAGCTGAACACGGGCAATAACAATGTTGGAGAGGATGTGAGAGTGATGACAAGGAAGAGCGTGGAGGATCCAGGGGAGCCGCCGGGGACGGTGCTGAGTGCAGCAACGTCGGTGTGGGTGGCGGCGACAGCAGAGAGAGTGTTTGAGTTTCTTCGTGATGAGCGACTGAGGAGCGAATGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAAATGCTCCATATCCCCAAAGCCCATCACCATCACCATGCCAACGCCGTCTCTCTCCTCCGTGCCACCTCTCTAAATCCAAACCAGAGCAGTATGCTGATTCTGCAAGAGACCTGCTCCGATGCATCTGGGTCGCTTGTAGTGTACGCGCCGGTGGATATTCCGGCAATGCAGGTGGTGATGAACGGCGGAGACTCGGCCTACGTGGCTCTACTACCGTCGGGGTTCGCGGTGGTACCGGCGGCGGAGGATTGTGGCGGTGGGAGCCTGTTGACGGTGGCGTTTCAGATATTGGTGAACAGTTTACCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACAGTGAATAATCTGATATCGTGTACGGTACAGAAAATTAAAACCGCTCTCCGGTGTCACGAGCTTTCCACGTGA 2226 53.64 MSSAPRFDSSSAHGGGIGGIGGGHGTLMASGAIAQPRLVTQSSFSKSMFSSPRLSLALTNIDGFGAGEMIPADVGFEENVRRRRREEEATDSRSGSDNMDGGGGSGDDLDAAVGDNPRKKKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLSLEIKQVKFWFQNRRTQMKTQLERHENTLLRHENEKLRTENMAIREAMRSPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFVVRPVPVSPPLEEYGGGMMMMERCVYLEMALAAMDELVKMANGEEPLWIGEKLNEEEYSRMFSGGCFGGFVSEASRESALLFLHSSALLDTLMEANRWVEMFPNLIATATTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLNFLRFCKQHAEGVWTVVDVSIDPITDTSSPPCRRLPSGCLIHDMPNGYSKVTWVEHSEYDESQIHELYRPLVRSGLGFGARRWIATLQRQSEALATLISSPSDHSGISADGRRNMVKLAQRMTANFCTGVCASTVYKWNKLNTGNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAATAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKAHHHHHANAVSLLRATSLNPNQSSMLILQETCSDASGSLVVYAPVDIPAMQVVMNGGDSAYVALLPSGFAVVPAAEDCGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKTALRCHELST 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14093630 14097599 + CmaCh14G020140.1 Cma14g02014 308997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g02014 741 ProSiteProfiles 'Homeobox' domain profile. 117 177 IPR001356 GO:0003677
Cma14g02014 741 SUPERFAMILY Homeodomain-like 101 177 IPR009057 -
Cma14g02014 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 269 735 - -
Cma14g02014 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 75 261 - -
Cma14g02014 741 SUPERFAMILY Bet v1-like 506 724 - -
Cma14g02014 741 Coils Coil 218 238 - -
Cma14g02014 741 MobiDBLite consensus disorder prediction 78 127 - -
Cma14g02014 741 Pfam Homeodomain 120 175 IPR001356 GO:0003677
Cma14g02014 741 SUPERFAMILY Bet v1-like 272 489 - -
Cma14g02014 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 269 735 IPR042160 -
Cma14g02014 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 75 261 IPR042160 -
Cma14g02014 741 Pfam START domain 278 487 IPR002913 GO:0008289
Cma14g02014 741 ProSiteProfiles START domain profile. 268 491 IPR002913 GO:0008289
Cma14g02014 741 Coils Coil 171 198 - -
Cma14g02014 741 MobiDBLite consensus disorder prediction 78 94 - -
Cma14g02014 741 CDD START_ArGLABRA2_like 276 487 - -
Cma14g02014 741 ProSitePatterns 'Homeobox' domain signature. 152 175 IPR017970 GO:0000981|GO:0006355
Cma14g02014 741 SMART HOX_1 118 181 IPR001356 GO:0003677
Cma14g02014 741 CDD homeodomain 120 177 IPR001356 GO:0003677
Cma14g02014 741 Gene3D - 110 193 - -
Cma14g02014 741 SMART START_1 277 488 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g02014 Cma17g00018 CCT
Cma14g02014 Cma17g00018 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02014 Cma-Chr14:14093630 Cma17g00018 Cma-Chr17:72796 0 dispersed
Cma14g02014 Cma-Chr14:14093630 Cma16g00140 Cma-Chr16:612841 0 wgd
Cma14g02014 Cma-Chr14:14093630 Cma18g01234 Cma-Chr18:9694311 0 wgd
Cma14g02014 Cma-Chr14:14093630 Cma08g00920 Cma-Chr8:5742070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36345 PF01852 START 1.40E-47 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g02014 K09338 - csv:101222248 941.028