Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g02022 | ATGTCCAAAATTGGAGCGGATCCCAGTAGAACGTTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTTGTTGATTTATTGTCTCTTGAAGGAATTCCTTACCACAAGCATTGCTTCAAATGCAGCCACTGCAAAGGCACTCTTTCGATGAGCAGCTACTCGTGGATGGATGGTGTCCTGTATTGCAAGACTCATTTCGAGCAACTCTTTAAAGAATCTGGAAATTTCAGCAAGAACTTTCAAACCAAGCCTTCTGAGAAGCAAAGTGAACTGACAAGGACCCCCAGCAAACTCTCCACCATGTTCTCTGGAACTCAAGATAAATGTTCTGTTTGCACCAAAACAGTTTATCCATTAGAGAAGGTGACTCTGGAGGGGGAATGCTACCACAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACGGTTCATATGCTGCTCTTGATGGAGTATTGTACTGCAAGCACCATTTTTCTCAGCTGTTCATGGTCAAAGGCAACTACAACCATGTCCTTGAAGCTGCTGCAAACAAGAAAAACACCACACCCCCGGCCGATCGCGCCGAAGAAGATGCCGAGTCTCAGCCTCAATCCGAGGATCATGCATCGACTGCGTATCACGCGCCTAAGAAGCGCGCGTGTCTTTGTGCCTTTCATTCCGAATATCCAACGCCCCGCAAACGAATCAACGATGAGCCCGTCGACCAACGAAGGGCCATTTCTCAAAATGTGTTATGTGGTAGTGAAAGAACACATTGCAAGACGTTGGATCAGTTTGGCCTCAGATATGTGCTTAGAAGTAGAGCTCTTGATGCCAAGATGAGTGGTGGTTCAAGAGTAATTTATAAGGTGCCTAATAAGAGAAACAGAATTGTATCTTCTAGCGATTCCTTTCACTTGAGTCTGGTTTGTGCTAGCAAGTTTGATGGTGCCTTGCAAATATCTAAGCACAAGCGATTCTTGAACTGTAACTATAATGGTAGAAAGATGGGGATGGTTCATTCAGAGTGTCAAAGCAACGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAGATACTGGTGATGAAGGATCAAGTTCTGTGCCTACTGATGGGGTAGGGTCAGCTGGTTCCAGAGAAGCCGGTGGAGAAACAGAAGCAGTAGAAACGGTTGCACCAACTGTTGATGAGCTTAGAGAATTGCTGCAAAAGGCTATGAAAGAACTGGAAGTTGCGAGACTTAACAGTACCATGTTCGAGGAGAAGGCCCAGAAAATATCAGAAACAGCAATAGCTTTGCAAGATGAAGCAACCCATGCTCGGAATGATGTGAACTCTACTCTTGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCTGTTCAAAAAGCTACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCAATGGAGCTGGCAAAAGGAGGAAATGATTTTCCGGAAACATCAATAAATAGTGAGAGGGAGATTGACGGCAAGGATGAGCAAGACGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGGGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTACAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACCGGTTGAATGAGTTGGCTGAAAAGGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTCGCAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTGTCAAGTTCTTTTGTCGACACTTCGGAAATCACTCAGGGGTTAAATGTTATTGAAGAAGTTGAGAATGAGGATAATAAGGCAGTTCCAGAAATATCTGGTGATATAGCTGTCGAAATGGATAGAGATTTACCACTTAGTGGTGATTCCTTAGTTATTAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCCTCAAAAGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAGCAAAAAAGCCGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTGTAAATTCCCCAAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTGCAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTTTCCTGGATTCCACGAAAAAGCAATTGCCAAAGCTAGTTGTTGGAGCAGTACTATTCGGAGCAGGGATTGCTATCTTAGCAAATCGAGCAGAAAGGAATTCTCTTATGTTTCAGCAGCCTGATGTTGTCACTACTAGCACCGATGAAGTTTCCTTGAATACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCTAAAAGAGTGAAAAAGTTAATTGCAAAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTGTTAGATGTGTTATGGCTGTTGCTTGCTAGTGTTATATTTGTACCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGATACTTGGCTGCTGGCATTTTAATTGGGCCATATGGTCTCTCCATAATTCGTCACGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGCTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTGTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTGGTGGTTGGCTTGGTTGCTCATATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATCGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGACTACTAATGAAGTAGTGTTTGCTAAATTTGGAGTGTTGGATATAGTGATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGCCTGGCTGCTGTTAAGGCAATAGTTGCCATTTCTGCCATAATAGCTGGTGGGCGCCTGGCCGGGCTATCAATGGCACTGGGTGCCTTTCTAGCAGGTTTACTGCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTATCTAACTTTCCAGTTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGACTTTTTGGCGTCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATTATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGAATTTCAATGGCCCTTACGCCGTGGCTGGCTGCTGGTGGTCAGTTAATTGCTTCTCGGTTTGAGCAGCATGATGTTCGGAGTTTATTGCCTGTTGAAAGTGAGACTGATGATTTACAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCTTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCTGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGGGCTACCGCGGTAGTTCCCGAGACGTTGGAACCCAGCTTACAGTTAGCTGCTGCTGTTCTTGCTCAGGCTAAACTACCCACATCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCTCGGCATTTATCCGAGCTTACCGAGCTATGTGAAGCCAGTGGAAGTTCACTCGGATACGGGTTTTCTCGAATCATGAGTAAACCGAAAGTTCAAACCTCTGATTCCTCGGACGAGAATCAAGCAAGAGAAAGAAAGAAAGAAGAGGAGGAAGAAGAAGAAAAAAAGGTTGATTTGCTATAA | 4149 | 43.7 | MSKIGADPSRTLDKCKACDKTVYVVDLLSLEGIPYHKHCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTKPSEKQSELTRTPSKLSTMFSGTQDKCSVCTKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHGSYAALDGVLYCKHHFSQLFMVKGNYNHVLEAAANKKNTTPPADRAEEDAESQPQSEDHASTAYHAPKKRACLCAFHSEYPTPRKRINDEPVDQRRAISQNVLCGSERTHCKTLDQFGLRYVLRSRALDAKMSGGSRVIYKVPNKRNRIVSSSDSFHLSLVCASKFDGALQISKHKRFLNCNYNGRKMGMVHSECQSNDSLAFIDGNGRNMEYVDTGDEGSSSVPTDGVGSAGSREAGGETEAVETVAPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISETAIALQDEATHARNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESMELAKGGNDFPETSINSEREIDGKDEQDVLLVAQEDIKECRANLENCDAELKRLQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMLLAEQAVAFELEAAQRVSDAEIALQKVEKSLSSSFVDTSEITQGLNVIEEVENEDNKAVPEISGDIAVEMDRDLPLSGDSLVIKSLPGSFSDSEDSDQPYYLSDSENGKLSSDSSKEVESGAEKSILSQAKKPETQKDLTREGSPVNSPKALLKKSSRFFSASFFSFAVDGTEFTPALVFQGFLDSTKKQLPKLVVGAVLFGAGIAILANRAERNSLMFQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLIAKLPHQEVNEEEASLLDVLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQTTNEVVFAKFGVLDIVIGFQAIAEALGLAAVKAIVAISAIIAGGRLAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRLFGVSIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSRETFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKVQTSDSSDENQARERKKEEEEEEEKKVDLL | 1382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 14121121 | 14136658 | - | CmaCh14G020220.1 | Cma14g02022 | 309005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g02022 | 1382 | MobiDBLite | consensus disorder prediction | 1351 | 1382 | - | - | |
Cma14g02022 | 1382 | MobiDBLite | consensus disorder prediction | 362 | 386 | - | - | |
Cma14g02022 | 1382 | Gene3D | - | 842 | 1042 | IPR038770 | - | |
Cma14g02022 | 1382 | MobiDBLite | consensus disorder prediction | 183 | 207 | - | - | |
Cma14g02022 | 1382 | ProSitePatterns | LIM zinc-binding domain signature. | 15 | 49 | IPR001781 | - | |
Cma14g02022 | 1382 | Coils | Coil | 1358 | 1378 | - | - | |
Cma14g02022 | 1382 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 41 | 81 | - | - | |
Cma14g02022 | 1382 | Pfam | Sodium/hydrogen exchanger family | 852 | 1033 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Cma14g02022 | 1382 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 1210 | 1313 | IPR036291 | - | |
Cma14g02022 | 1382 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 1043 | 1266 | - | - | |
Cma14g02022 | 1382 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 266 | 1043 | - | - | |
Cma14g02022 | 1382 | PANTHER | K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC | 1267 | 1366 | - | - | |
Cma14g02022 | 1382 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 11 | 40 | - | - | |
Cma14g02022 | 1382 | ProSiteProfiles | LIM domain profile. | 13 | 73 | IPR001781 | - | |
Cma14g02022 | 1382 | Coils | Coil | 517 | 572 | - | - | |
Cma14g02022 | 1382 | CDD | LIM1_SF3 | 11 | 73 | - | - | |
Cma14g02022 | 1382 | Pfam | TrkA-N domain | 1214 | 1319 | IPR003148 | GO:0006813 | |
Cma14g02022 | 1382 | MobiDBLite | consensus disorder prediction | 1359 | 1382 | - | - | |
Cma14g02022 | 1382 | ProSiteProfiles | RCK N-terminal domain profile. | 1213 | 1332 | IPR003148 | GO:0006813 | |
Cma14g02022 | 1382 | MobiDBLite | consensus disorder prediction | 187 | 201 | - | - | |
Cma14g02022 | 1382 | Gene3D | Cysteine Rich Protein | 104 | 174 | - | - | |
Cma14g02022 | 1382 | Gene3D | Cysteine Rich Protein | 10 | 79 | - | - | |
Cma14g02022 | 1382 | MobiDBLite | consensus disorder prediction | 664 | 726 | - | - | |
Cma14g02022 | 1382 | SMART | lim_4 | 14 | 66 | IPR001781 | - | |
Cma14g02022 | 1382 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
Cma14g02022 | 1382 | Pfam | LIM domain | 15 | 70 | IPR001781 | - | |
Cma14g02022 | 1382 | Pfam | LIM domain | 110 | 165 | IPR001781 | - | |
Cma14g02022 | 1382 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - | |
Cma14g02022 | 1382 | Coils | Coil | 397 | 417 | - | - | |
Cma14g02022 | 1382 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
Cma14g02022 | 1382 | MobiDBLite | consensus disorder prediction | 664 | 686 | - | - | |
Cma14g02022 | 1382 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
Cma14g02022 | 1382 | PANTHER | K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED | 266 | 1043 | - | - | |
Cma14g02022 | 1382 | PANTHER | K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED | 1043 | 1266 | - | - | |
Cma14g02022 | 1382 | PANTHER | K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED | 1267 | 1366 | - | - | |
Cma14g02022 | 1382 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
Cma14g02022 | 1382 | Gene3D | - | 1209 | 1267 | - | - | |
Cma14g02022 | 1382 | Gene3D | - | 1268 | 1335 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01094 | Cma14g02022 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01093 | Cma-Chr6:7377007 | Cma14g02022 | Cma-Chr14:14121121 | 1.06E-21 | dispersed | |
Cma06g01094 | Cma-Chr6:7379830 | Cma14g02022 | Cma-Chr14:14121121 | 0 | dispersed | |
Cma11g01680 | Cma-Chr11:11055183 | Cma14g02022 | Cma-Chr14:14121121 | 1.24E-40 | dispersed | |
Cma14g02022 | Cma-Chr14:14121121 | Cma15g00120 | Cma-Chr15:559805 | 3.65E-20 | dispersed | |
Cma14g02019 | Cma-Chr14:14115674 | Cma14g02022 | Cma-Chr14:14121121 | 2.01E-19 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36347 | PF00999 | Na_H_Exchanger | 1.10E-22 | CL0064 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g02022 | - | - | cmo:103483290 | 1781.92 |