Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g02022 ATGTCCAAAATTGGAGCGGATCCCAGTAGAACGTTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTTGTTGATTTATTGTCTCTTGAAGGAATTCCTTACCACAAGCATTGCTTCAAATGCAGCCACTGCAAAGGCACTCTTTCGATGAGCAGCTACTCGTGGATGGATGGTGTCCTGTATTGCAAGACTCATTTCGAGCAACTCTTTAAAGAATCTGGAAATTTCAGCAAGAACTTTCAAACCAAGCCTTCTGAGAAGCAAAGTGAACTGACAAGGACCCCCAGCAAACTCTCCACCATGTTCTCTGGAACTCAAGATAAATGTTCTGTTTGCACCAAAACAGTTTATCCATTAGAGAAGGTGACTCTGGAGGGGGAATGCTACCACAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACGGTTCATATGCTGCTCTTGATGGAGTATTGTACTGCAAGCACCATTTTTCTCAGCTGTTCATGGTCAAAGGCAACTACAACCATGTCCTTGAAGCTGCTGCAAACAAGAAAAACACCACACCCCCGGCCGATCGCGCCGAAGAAGATGCCGAGTCTCAGCCTCAATCCGAGGATCATGCATCGACTGCGTATCACGCGCCTAAGAAGCGCGCGTGTCTTTGTGCCTTTCATTCCGAATATCCAACGCCCCGCAAACGAATCAACGATGAGCCCGTCGACCAACGAAGGGCCATTTCTCAAAATGTGTTATGTGGTAGTGAAAGAACACATTGCAAGACGTTGGATCAGTTTGGCCTCAGATATGTGCTTAGAAGTAGAGCTCTTGATGCCAAGATGAGTGGTGGTTCAAGAGTAATTTATAAGGTGCCTAATAAGAGAAACAGAATTGTATCTTCTAGCGATTCCTTTCACTTGAGTCTGGTTTGTGCTAGCAAGTTTGATGGTGCCTTGCAAATATCTAAGCACAAGCGATTCTTGAACTGTAACTATAATGGTAGAAAGATGGGGATGGTTCATTCAGAGTGTCAAAGCAACGATTCTTTAGCATTTATTGATGGAAATGGCAGAAATATGGAATATGTAGATACTGGTGATGAAGGATCAAGTTCTGTGCCTACTGATGGGGTAGGGTCAGCTGGTTCCAGAGAAGCCGGTGGAGAAACAGAAGCAGTAGAAACGGTTGCACCAACTGTTGATGAGCTTAGAGAATTGCTGCAAAAGGCTATGAAAGAACTGGAAGTTGCGAGACTTAACAGTACCATGTTCGAGGAGAAGGCCCAGAAAATATCAGAAACAGCAATAGCTTTGCAAGATGAAGCAACCCATGCTCGGAATGATGTGAACTCTACTCTTGATTCTGTACAACAGATAGTGAATGAAGAATATGCTGCCAAAGAAGCTGTTCAAAAAGCTACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCAATGGAGCTGGCAAAAGGAGGAAATGATTTTCCGGAAACATCAATAAATAGTGAGAGGGAGATTGACGGCAAGGATGAGCAAGACGTGTTGTTAGTTGCTCAGGAGGACATCAAAGAATGCCGGGCAAATTTGGAAAATTGTGATGCGGAATTGAAGCGCTTACAGAGTAAAAAGGAAGAGTTACAGAAGGAAGTGGACCGGTTGAATGAGTTGGCTGAAAAGGCACAATTGAATGCGTTGAAAGCTGAAGAAGATGTCGCAAATATAATGCTTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCCCAAAGGGTCAGTGATGCTGAAATAGCTTTACAGAAAGTGGAGAAATCTTTGTCAAGTTCTTTTGTCGACACTTCGGAAATCACTCAGGGGTTAAATGTTATTGAAGAAGTTGAGAATGAGGATAATAAGGCAGTTCCAGAAATATCTGGTGATATAGCTGTCGAAATGGATAGAGATTTACCACTTAGTGGTGATTCCTTAGTTATTAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCCTCAAAAGAGGTTGAATCTGGAGCAGAGAAGTCTATTTTGAGTCAAGCAAAAAAGCCGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTGTAAATTCCCCAAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTGCAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTTTCCTGGATTCCACGAAAAAGCAATTGCCAAAGCTAGTTGTTGGAGCAGTACTATTCGGAGCAGGGATTGCTATCTTAGCAAATCGAGCAGAAAGGAATTCTCTTATGTTTCAGCAGCCTGATGTTGTCACTACTAGCACCGATGAAGTTTCCTTGAATACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCTAAAAGAGTGAAAAAGTTAATTGCAAAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTGTTAGATGTGTTATGGCTGTTGCTTGCTAGTGTTATATTTGTACCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGATACTTGGCTGCTGGCATTTTAATTGGGCCATATGGTCTCTCCATAATTCGTCACGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGCTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTGTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTGGTGGTTGGCTTGGTTGCTCATATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATCGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGACTACTAATGAAGTAGTGTTTGCTAAATTTGGAGTGTTGGATATAGTGATTGGTTTTCAAGCCATTGCTGAAGCTCTCGGCCTGGCTGCTGTTAAGGCAATAGTTGCCATTTCTGCCATAATAGCTGGTGGGCGCCTGGCCGGGCTATCAATGGCACTGGGTGCCTTTCTAGCAGGTTTACTGCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTATCTAACTTTCCAGTTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGACTTTTTGGCGTCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATTATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGAATTTCAATGGCCCTTACGCCGTGGCTGGCTGCTGGTGGTCAGTTAATTGCTTCTCGGTTTGAGCAGCATGATGTTCGGAGTTTATTGCCTGTTGAAAGTGAGACTGATGATTTACAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCTTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCTGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGGGCTACCGCGGTAGTTCCCGAGACGTTGGAACCCAGCTTACAGTTAGCTGCTGCTGTTCTTGCTCAGGCTAAACTACCCACATCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCTCGGCATTTATCCGAGCTTACCGAGCTATGTGAAGCCAGTGGAAGTTCACTCGGATACGGGTTTTCTCGAATCATGAGTAAACCGAAAGTTCAAACCTCTGATTCCTCGGACGAGAATCAAGCAAGAGAAAGAAAGAAAGAAGAGGAGGAAGAAGAAGAAAAAAAGGTTGATTTGCTATAA 4149 43.7 MSKIGADPSRTLDKCKACDKTVYVVDLLSLEGIPYHKHCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTKPSEKQSELTRTPSKLSTMFSGTQDKCSVCTKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHGSYAALDGVLYCKHHFSQLFMVKGNYNHVLEAAANKKNTTPPADRAEEDAESQPQSEDHASTAYHAPKKRACLCAFHSEYPTPRKRINDEPVDQRRAISQNVLCGSERTHCKTLDQFGLRYVLRSRALDAKMSGGSRVIYKVPNKRNRIVSSSDSFHLSLVCASKFDGALQISKHKRFLNCNYNGRKMGMVHSECQSNDSLAFIDGNGRNMEYVDTGDEGSSSVPTDGVGSAGSREAGGETEAVETVAPTVDELRELLQKAMKELEVARLNSTMFEEKAQKISETAIALQDEATHARNDVNSTLDSVQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESMELAKGGNDFPETSINSEREIDGKDEQDVLLVAQEDIKECRANLENCDAELKRLQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMLLAEQAVAFELEAAQRVSDAEIALQKVEKSLSSSFVDTSEITQGLNVIEEVENEDNKAVPEISGDIAVEMDRDLPLSGDSLVIKSLPGSFSDSEDSDQPYYLSDSENGKLSSDSSKEVESGAEKSILSQAKKPETQKDLTREGSPVNSPKALLKKSSRFFSASFFSFAVDGTEFTPALVFQGFLDSTKKQLPKLVVGAVLFGAGIAILANRAERNSLMFQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLIAKLPHQEVNEEEASLLDVLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQTTNEVVFAKFGVLDIVIGFQAIAEALGLAAVKAIVAISAIIAGGRLAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRLFGVSIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSRETFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPTSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKVQTSDSSDENQARERKKEEEEEEEKKVDLL 1382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14121121 14136658 - CmaCh14G020220.1 Cma14g02022 309005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g02022 1382 MobiDBLite consensus disorder prediction 1351 1382 - -
Cma14g02022 1382 MobiDBLite consensus disorder prediction 362 386 - -
Cma14g02022 1382 Gene3D - 842 1042 IPR038770 -
Cma14g02022 1382 MobiDBLite consensus disorder prediction 183 207 - -
Cma14g02022 1382 ProSitePatterns LIM zinc-binding domain signature. 15 49 IPR001781 -
Cma14g02022 1382 Coils Coil 1358 1378 - -
Cma14g02022 1382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 41 81 - -
Cma14g02022 1382 Pfam Sodium/hydrogen exchanger family 852 1033 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma14g02022 1382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1210 1313 IPR036291 -
Cma14g02022 1382 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1043 1266 - -
Cma14g02022 1382 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 266 1043 - -
Cma14g02022 1382 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1267 1366 - -
Cma14g02022 1382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 11 40 - -
Cma14g02022 1382 ProSiteProfiles LIM domain profile. 13 73 IPR001781 -
Cma14g02022 1382 Coils Coil 517 572 - -
Cma14g02022 1382 CDD LIM1_SF3 11 73 - -
Cma14g02022 1382 Pfam TrkA-N domain 1214 1319 IPR003148 GO:0006813
Cma14g02022 1382 MobiDBLite consensus disorder prediction 1359 1382 - -
Cma14g02022 1382 ProSiteProfiles RCK N-terminal domain profile. 1213 1332 IPR003148 GO:0006813
Cma14g02022 1382 MobiDBLite consensus disorder prediction 187 201 - -
Cma14g02022 1382 Gene3D Cysteine Rich Protein 104 174 - -
Cma14g02022 1382 Gene3D Cysteine Rich Protein 10 79 - -
Cma14g02022 1382 MobiDBLite consensus disorder prediction 664 726 - -
Cma14g02022 1382 SMART lim_4 14 66 IPR001781 -
Cma14g02022 1382 SMART lim_4 109 161 IPR001781 -
Cma14g02022 1382 Pfam LIM domain 15 70 IPR001781 -
Cma14g02022 1382 Pfam LIM domain 110 165 IPR001781 -
Cma14g02022 1382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Cma14g02022 1382 Coils Coil 397 417 - -
Cma14g02022 1382 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Cma14g02022 1382 MobiDBLite consensus disorder prediction 664 686 - -
Cma14g02022 1382 CDD LIM2_SF3 110 170 - -
Cma14g02022 1382 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 266 1043 - -
Cma14g02022 1382 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1043 1266 - -
Cma14g02022 1382 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1267 1366 - -
Cma14g02022 1382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Cma14g02022 1382 Gene3D - 1209 1267 - -
Cma14g02022 1382 Gene3D - 1268 1335 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01094 Cma14g02022 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01093 Cma-Chr6:7377007 Cma14g02022 Cma-Chr14:14121121 1.06E-21 dispersed
Cma06g01094 Cma-Chr6:7379830 Cma14g02022 Cma-Chr14:14121121 0 dispersed
Cma11g01680 Cma-Chr11:11055183 Cma14g02022 Cma-Chr14:14121121 1.24E-40 dispersed
Cma14g02022 Cma-Chr14:14121121 Cma15g00120 Cma-Chr15:559805 3.65E-20 dispersed
Cma14g02019 Cma-Chr14:14115674 Cma14g02022 Cma-Chr14:14121121 2.01E-19 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36347 PF00999 Na_H_Exchanger 1.10E-22 CL0064 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g02022 - - cmo:103483290 1781.92