Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g02042 ATGGCGGTTGTGAGTTCTAAGCAAGAAGCTACACCCCGAGCTGGTCCAACTAACTATGCTGAAGCTTCGCCAATTATGATCAGTTCAAGTAGAGAGATTGTAGAAGTGTCAGTCGGAGCTATTAGTGAAGATATTATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAATTCCTCTCGTGGGAAGAAAATTTGCCTCCTCCACGTTCATGTCCCTGCACAGATGACTCCATTAAACGGAACCAAAGAGGAAGTGAGAGCATATCACAAGTTTGAGAAGCAAAATTTGCTGAGGGTCATGAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCGTGCCAAGAAATTATGTGGCGAAGCTAAGAGTGTTGAGGTGGGGATAGTTGATATGATTTCCCTGCATAGGATTAAAAAGCTTGTTATGGGAGCTGCTGTAGACAAGTGTTATTCAAGGAGAATGGTGGATCTGAAGTCTGAGAAAGCCATTTACGTGCGTTCGCAGGCACCTGCCTTCTGTCACATTGAGTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGATGGTAGATCAGATGGAGCTCAAGTAGAAACTGTCTTCTTATCACCGCAAACAAGTCCAGACTCAGAATCCTCAGAAATTTCCCCGTGGAGATCTCTGTCACTACCACCGGGACAGTTTCATAGCAGGGAAGTTGGATGTTCATCTTCAGATTTACGTCCTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGGGAGCACACTAAATCCGTCTTCTCCTGATAATATGAATGGGGTTCATACTGCCAGAAACTTGGATGTTAACGAGGCTTCGGATGGATGGGGTTTATTAACACAGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCATGATGTGATTAATATGGCTCCTTCTCCACCTTCCAGGGTTGAGTTATGTGCAAATTGGCTGGAGCAGGATGCAAAGTCCGGTGATTATCTTTACAATCAATGTGAACGGGTGATGATAGGGGCTGCAAATGCAAGGCCTGATTCATTTTTCGAAGCAATTGCACGCGGAAAATCTGAGAAAGAAACCATTAATGCTCTACGCAGGGTTAAAGCTGCAGAAGTGTTATATTCTGAAGAACGGAAGCAAAGGAAGGAGGTTGAACAAGAACTAGTCAAGGAAAATGCAAAACTTGAAAGTATAAAGACAAAACTAAATGAAGAGATGGAAGAGCTCCGGATGGCCCAAGATCAGAAGGCAAGTTTGGAGAGAGAACTTTTAGAATCTGATCTAACTGCGAAGGAGTTAGAGGAAAGGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGTGAGCGAGAGGAATTGCAGATTCAGCACGACAATGCACTTAGAGAAGCAGACGAGCTTAGAAGAAGAAATCAATCCACACGCCGGTTCCTTCCACAGTTCTTTACCGAGTTCCCTTTTTCGGAGATTGAGGAAGCAACTCAAAACTTGGATCCTTCCCTGAAGATTGGAGAAGGGGGATATGGGAGTATATACCGAGGTGTTTTACGTCATACGACGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGACCCTCTGAATTTCAACAAGAGGTTGATGTATCGAGTAAGATGAGACATCCTAATCTTGTCACGCTCATTGGAGCCTGTCCTGAAGCTTTGGTTCTCGTCTATGAATACCTTAGTAATGGAAGCCTCGAAGATAGGCTCAGCTGCAAGGATAACACTCCCCCTTTATCTTGGCAAACACGATTACGCATCGCCACTGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGAAAACTATGTATGCAAGCTTGGCGAGTTTGGAATTTGTCACTTATTGTCACATGATGAAATGCTAAACAACGACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACGGTTGCTTACACGGATCCTGAGTTCCTTTCATCTGGTGAGCTAACAACAGAGTCGGATGTCTATTCATTTGGGATAATACTCTTGCGGTTGTTGACCGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAAAATGCAATTGAAAATGGAAAGCTAAAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCATTCGTGCAGGCCGAACAGCTTGCTCGATTGGCATTGAGGTGTTGTGACGTGAACCGAAAGAGCCGCCCCGATCTTGTTACCGATGTCTGGAGAGTGCTTGGACCAATGAGAGCTTCATGTGGGGGTCTATTGTCTGTCAAGCTCGGTTCTGCAGAACACTTGCAACCTCCCCCTTATTTCATCTGTCCCATCTTTCAGGAAGTCATGCAGGATCCACATGTGGCTGCAGATGGCTTTACATATGAAGCGGAGGCCATGAGAGGATGGCTAGACAGTGGACACGATACTTCGCCAATGACAAACTGTAGGCTCGAGCATCGCAACCTCGTCCCAAACCGCGCTCTTCGTTCTGCTATCCAGGAATGGCTCCAACGAAACTAA 2613 44.7 MAVVSSKQEATPRAGPTNYAEASPIMISSSREIVEVSVGAISEDIICVAVGKDVKECLSVLRYALNSSRGKKICLLHVHVPAQMTPLNGTKEEVRAYHKFEKQNLLRVMNEYILYCLQEGVRAKKLCGEAKSVEVGIVDMISLHRIKKLVMGAAVDKCYSRRMVDLKSEKAIYVRSQAPAFCHIEFICKGNLICTRDGRSDGAQVETVFLSPQTSPDSESSEISPWRSLSLPPGQFHSREVGCSSSDLRPRGRSLLVDHFRGSTLNPSSPDNMNGVHTARNLDVNEASDGWGLLTQRSPSERSDNSIRSPHDVINMAPSPPSRVELCANWLEQDAKSGDYLYNQCERVMIGAANARPDSFFEAIARGKSEKETINALRRVKAAEVLYSEERKQRKEVEQELVKENAKLESIKTKLNEEMEELRMAQDQKASLERELLESDLTAKELEERILSAVELLQSYKSEREELQIQHDNALREADELRRRNQSTRRFLPQFFTEFPFSEIEEATQNLDPSLKIGEGGYGSIYRGVLRHTTVAIKILHSDSSQGPSEFQQEVDVSSKMRHPNLVTLIGACPEALVLVYEYLSNGSLEDRLSCKDNTPPLSWQTRLRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDENYVCKLGEFGICHLLSHDEMLNNDETLVWRTDNPKGTVAYTDPEFLSSGELTTESDVYSFGIILLRLLTGRSAMGISKEVQNAIENGKLKSILDPLAGDWPFVQAEQLARLALRCCDVNRKSRPDLVTDVWRVLGPMRASCGGLLSVKLGSAEHLQPPPYFICPIFQEVMQDPHVAADGFTYEAEAMRGWLDSGHDTSPMTNCRLEHRNLVPNRALRSAIQEWLQRN 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14233727 14239355 + CmaCh14G020420.1 Cma14g02042 309025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g02042 870 Gene3D Phosphorylase Kinase; domain 1 491 583 - -
Cma14g02042 870 SUPERFAMILY Protein kinase-like (PK-like) 486 769 IPR011009 -
Cma14g02042 870 Pfam Protein kinase domain 516 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g02042 870 MobiDBLite consensus disorder prediction 295 317 - -
Cma14g02042 870 Gene3D Transferase(Phosphotransferase) domain 1 584 782 - -
Cma14g02042 870 ProSiteProfiles U-box domain profile. 799 870 IPR003613 GO:0004842|GO:0016567
Cma14g02042 870 CDD RING-Ubox_WDSUB1_like 804 845 - -
Cma14g02042 870 Pfam U-box domain 801 870 IPR003613 GO:0004842|GO:0016567
Cma14g02042 870 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 41 866 - -
Cma14g02042 870 ProSitePatterns Protein kinases ATP-binding region signature. 517 538 IPR017441 GO:0005524
Cma14g02042 870 SMART Ubox_2 803 866 IPR003613 GO:0004842|GO:0016567
Cma14g02042 870 SMART serkin_6 511 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g02042 870 SUPERFAMILY RING/U-box 795 870 - -
Cma14g02042 870 PANTHER OS02G0152300 PROTEIN 41 866 - -
Cma14g02042 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Cma14g02042 870 Coils Coil 380 484 - -
Cma14g02042 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 799 870 IPR013083 -
Cma14g02042 870 ProSiteProfiles Protein kinase domain profile. 511 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma14g02042 870 CDD STK_N 48 190 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01069 Cma14g02042 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02042 Cma-Chr14:14233727 Cma17g00434 Cma-Chr17:2556606 0 dispersed
Cma07g00578 Cma-Chr7:2498914 Cma14g02042 Cma-Chr14:14233727 1.45E-73 transposed
Cma14g02042 Cma-Chr14:14233727 Cma16g00117 Cma-Chr16:529363 1.45E-06 wgd
Cma14g02042 Cma-Chr14:14233727 Cma18g01253 Cma-Chr18:9779557 7.61E-25 wgd
Cma14g02042 Cma-Chr14:14233727 Cma06g01069 Cma-Chr6:7196334 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69113 PF00069 Pkinase 5.50E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g02042 - - csv:101211387 1399.03