Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma14g02047 | ATGGGAGGCTGCTGCTGTTCGACCCGAAAATCTCACTCGGATGGAACTCCAGCATACTACTATTGCCCGCTGTCTATGGAGGAGCGTGAGTCATCCGAAATTCATGGTGGCTCAGCGTCCATGCTCCTCGGTGCAGGACATGATTTGAACCTGGATTTGTCGATACCGAACACTTACCGAGCCCCTCCAACACCGCTCCCGTATGATGCAGCTTTGAAATGTCCACAACCGAAAGATCTCAACTCTTTTAAAGAAACAAAATGTGGATGCAGTTTTAAAACTTCATCAGCATTGAAAATTGTTGGGGAACTGGATTGTAAGTTCCAAGACAGCCCTTTGCTCGGAGGCCCTCCACGGAAACTCGATCATTCCAAGTCGAAAGGCAATACTCCTACTCCGGTCACCGAAGAAGAGGATGTCTGTCCCATTTGTCTTGAAGAGTATGGTTCTGAACATCCAGAAATTATCACAAAATGCAAGCATCACTTTCACCTCGCTTGCCTTCTCGAGTGGACCGAAAGAAGCAATGCCTGTCCTATCTGCGACAAGGAGACGATATTTGAGCTACCTTGA | 573 | 47.64 | MGGCCCSTRKSHSDGTPAYYYCPLSMEERESSEIHGGSASMLLGAGHDLNLDLSIPNTYRAPPTPLPYDAALKCPQPKDLNSFKETKCGCSFKTSSALKIVGELDCKFQDSPLLGGPPRKLDHSKSKGNTPTPVTEEEDVCPICLEEYGSEHPEIITKCKHHFHLACLLEWTERSNACPICDKETIFELP | 190 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 14267968 | 14271874 | - | CmaCh14G020470.1 | Cma14g02047 | 309030 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma14g02047 | 190 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 188 | IPR013083 | - | |
| Cma14g02047 | 190 | MobiDBLite | consensus disorder prediction | 117 | 136 | - | - | |
| Cma14g02047 | 190 | Pfam | Ring finger domain | 140 | 181 | IPR001841 | - | |
| Cma14g02047 | 190 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 182 | IPR001841 | - | |
| Cma14g02047 | 190 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 188 | - | - | |
| Cma14g02047 | 190 | SMART | ring_2 | 141 | 181 | IPR001841 | - | |
| Cma14g02047 | 190 | SUPERFAMILY | RING/U-box | 135 | 187 | - | - | |
| Cma14g02047 | 190 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED | 1 | 188 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma14g02047 | Cma-Chr14:14267968 | Cma15g01239 | Cma-Chr15:7852624 | 2.13E-41 | dispersed | |
| Cma14g02047 | Cma-Chr14:14267968 | Cma02g01438 | Cma-Chr2:8277306 | 4.54E-46 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma14g02047 | - | - | cmo:103483261 | 300.827 |