Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g02113 ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACAGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCCGTGAGGAACGAGGCGAATTTGCAGAACAAGCTGTCGGATCTGGTGGAGAGACCCAACGCTTCGAATTTTAGCTGGAACTACGCAATTTTCTGGCAACTTTCCCATTCAAATTCTGGGGACTGGGTTTTGGGATGGGGAGATGGATTGTGTAGAGATCCTAGGGAGGGAGAGGAAACGGAAGCTACACAGATTCTTAGTCTTCGGCTTGAAGACGAGAGCCAACAGAGGATGAAGAAAACAGCACTGCAGAAGCTTCACACGCTGTTTGGAGGCTCTGATGAGGACAATTACGCCCTTGGATTGGACAGAGTCACTGAAACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCTAGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCAGGAAACATATCTGGCTTTTGGATGTGCTCAATTCGCCATCGGAGTATTGTGTGAGATCGTATCTGGCAAAATCCGCCGGGATTCGGACGGTTGTTCTGGTGCCGACCGATGTCGGAGTAGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTAGTGCAGTTGGTTAGATCATTGTTTTCATCCCAACCTTCCCTCAACCGAGTGAGGTCGTCTGCAACAATGTCCATGATGGCTGAAAGAAAAGATGAAAACACCCCATTTGTGAGTTTGGGGATTGCTGAAAGAGGAGGGGGGAATCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACCTGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGATAGGACATGGGAAGCATGTGCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCCTTCGCAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAAGGGAACACTACAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCTAGTCAATGGAGTTAGAGATGAATATTGTCTCAATCCCTATCAGTCGCAAAAGCTGGCCCAAATGCAAATTGATTTTTCTGGAGCAACATCGAGGCCTTCTGTGATTAACCGTGTAGGTGCGGATTCGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGATGAAAGGCGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGCAGGGAGGAACCACTGAATCATGTTGAGGCAGAGAGGCAGCGCCGTGAAAAGTTGAACCAACGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCGAAAATGGACAAAGCTTCATTGCTGGGAGATGCCATTGCTTACATTAACGAGCTTCAAACAAAAGTGAAGGCCATGGAAGTTGAACGTGAGAAATCCGGGGTCACCTCAAGTGAAGCAAGCCCGTCGGAGGTGAACCCAGAAATTGAAAAGAAAGACCAATTCCTTGATGTCGATATCGACATCGAAGCTGGTCATGACGAAGTGATCGTGAAGGTTAGCTGCCCATTAGAGTCGCATCCTGCATCAAGAGTAATCAAGACAATGAAAGAGGCTCAGATCAACGTTGTTGATTCGAAACTGTGTGAAGCAAATGATACGGTTGTGCACACATTTGTGATAAAGTCTCCGGGGTCGGAGCAGTTGACGAAGGAACAGTTGATAGCTGCATTTTCCCGGGACTCGACTCCGTTACACCCTCCGCTATCAACAGTTGGGTAA 1848 47.62 MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNEANLQNKLSDLVERPNASNFSWNYAIFWQLSHSNSGDWVLGWGDGLCRDPREGEETEATQILSLRLEDESQQRMKKTALQKLHTLFGGSDEDNYALGLDRVTETEMFFLASMYFSFPSGEGGPGKCLASRKHIWLLDVLNSPSEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQLVRSLFSSQPSLNRVRSSATMSMMAERKDENTPFVSLGIAERGGGNPKVFGQTLNSGNLGRSHFREKLAIRKMDDRTWEACANGGRIQFQSPRNGLRSPNLAHVHGLKQGNTTEIYGSPTPPVNNNHEQLVNGVRDEYCLNPYQSQKLAQMQIDFSGATSRPSVINRVGADSEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQTKVKAMEVEREKSGVTSSEASPSEVNPEIEKKDQFLDVDIDIEAGHDEVIVKVSCPLESHPASRVIKTMKEAQINVVDSKLCEANDTVVHTFVIKSPGSEQLTKEQLIAAFSRDSTPLHPPLSTVG 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14573817 14575664 - CmaCh14G021130.1 Cma14g02113 309096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g02113 615 MobiDBLite consensus disorder prediction 402 450 - -
Cma14g02113 615 Pfam Helix-loop-helix DNA-binding domain 443 489 IPR011598 GO:0046983
Cma14g02113 615 Gene3D - 432 502 IPR036638 GO:0046983
Cma14g02113 615 PANTHER MYC 13 608 IPR045084 GO:0003700|GO:0006355
Cma14g02113 615 MobiDBLite consensus disorder prediction 405 450 - -
Cma14g02113 615 SMART finulus 445 494 IPR011598 GO:0046983
Cma14g02113 615 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 439 488 IPR011598 GO:0046983
Cma14g02113 615 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Cma14g02113 615 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 442 501 IPR036638 GO:0046983
Cma14g02113 615 CDD bHLH_AtAIB_like 436 510 - -
Cma14g02113 615 PANTHER TRANSCRIPTION FACTOR MTB1 13 608 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma14g02113 Cma17g00504 CCT
Cma14g02113 Cma17g00504 ECH
Cma06g00648 Cma14g02113 CST
Cma06g01013 Cma14g02113 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01763 Cma-Chr2:9844465 Cma14g02113 Cma-Chr14:14573817 3.62E-37 dispersed
Cma06g00648 Cma-Chr6:3215044 Cma14g02113 Cma-Chr14:14573817 5.40E-68 dispersed
Cma06g01013 Cma-Chr6:6850415 Cma14g02113 Cma-Chr14:14573817 0 dispersed
Cma14g02113 Cma-Chr14:14573817 Cma19g00236 Cma-Chr19:1667766 2.49E-25 dispersed
Cma14g02113 Cma-Chr14:14573817 Cma19g00070 Cma-Chr19:402667 5.84E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36357 PF14215 bHLH-MYC_N 6.50E-53 CL0161 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g02113 - - csv:101208845 1064.29