Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma14g02146 | ATGGGCGGTAGAGATGACGAGTTGCGGCTGACTTTGAGTTTAGGGTTGGGAGTTCCGACTCGGCCTTCTTTTCAGCCGACTCACATTCACAGGCCATCGCACTCCATGCATAATCACATCCGCAATGGTTCTTGGAATGAGCTCTTTCAATTTTCTGATCGAAATGCCGATTCTAGGTCGTTTCTTAGGGGCATCGACGTGAATCGGCTGCCGACTGTCGTGGACGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACCGTTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGAGGCGGAGGCGGAGGCCGAGGCTGAGAGAGCCTCGTGCTCACAAGGGAGCGACGATGAAGACGGCGGAGGTGGCGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAACAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACTCTCAATCCAAAGCAAAAGCTGGCACTTGCAAGGCAGCTGAATCTGAGACCGAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACGAAACTGAAGCAGACAGAAGTGGATTGCGAGTACTTGAAGAGGTGCTGCGAGAATCTAACAGGGGAGAACAGAAGGCTGCAGAAGGAGGTGCAGGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCTACCACCCTCACCATGTGTCCTCAGTGTGAGCGTGTGGCAGTTTCCTCATCTTCTTCCACCACCTGCCATCCAGCAGCGGCTGCTGGTGTACAGCGTCCCTCCATGCCCATCAAACCCATGGGCGGCGGTGTTGCCGATTGA | 837 | 53.76 | MGGRDDELRLTLSLGLGVPTRPSFQPTHIHRPSHSMHNHIRNGSWNELFQFSDRNADSRSFLRGIDVNRLPTVVDGEEENGVSSPNSTVSSISGKRSEREAEAEAEAEAERASCSQGSDDEDGGGGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTGENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTTCHPAAAAGVQRPSMPIKPMGGGVAD | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 14697711 | 14699591 | - | CmaCh14G021460.1 | Cma14g02146 | 309129 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma14g02146 | 278 | CDD | homeodomain | 130 | 187 | IPR001356 | GO:0003677 | |
Cma14g02146 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 | 5 | 259 | - | - | |
Cma14g02146 | 278 | Coils | Coil | 199 | 219 | - | - | |
Cma14g02146 | 278 | SUPERFAMILY | Homeodomain-like | 117 | 187 | IPR009057 | - | |
Cma14g02146 | 278 | SMART | HOX_1 | 128 | 190 | IPR001356 | GO:0003677 | |
Cma14g02146 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 161 | 184 | IPR017970 | GO:0000981|GO:0006355 | |
Cma14g02146 | 278 | SMART | halz | 186 | 229 | IPR003106 | GO:0006355|GO:0043565 | |
Cma14g02146 | 278 | Pfam | Homeodomain | 130 | 184 | IPR001356 | GO:0003677 | |
Cma14g02146 | 278 | MobiDBLite | consensus disorder prediction | 95 | 131 | - | - | |
Cma14g02146 | 278 | Pfam | HD-ZIP protein N terminus | 1 | 100 | IPR006712 | GO:0005634 | |
Cma14g02146 | 278 | Gene3D | - | 124 | 191 | - | - | |
Cma14g02146 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 126 | 186 | IPR001356 | GO:0003677 | |
Cma14g02146 | 278 | Pfam | Homeobox associated leucine zipper | 186 | 220 | IPR003106 | GO:0006355|GO:0043565 | |
Cma14g02146 | 278 | MobiDBLite | consensus disorder prediction | 255 | 278 | - | - | |
Cma14g02146 | 278 | MobiDBLite | consensus disorder prediction | 79 | 94 | - | - | |
Cma14g02146 | 278 | MobiDBLite | consensus disorder prediction | 76 | 131 | - | - | |
Cma14g02146 | 278 | PANTHER | - | 5 | 259 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma14g02146 | Cma17g00057 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00798 | Cma-Chr6:4195958 | Cma14g02146 | Cma-Chr14:14697711 | 4.63E-82 | dispersed | |
Cma14g02146 | Cma-Chr14:14697711 | Cma16g01122 | Cma-Chr16:8618431 | 2.44E-99 | dispersed | |
Cma14g02146 | Cma-Chr14:14697711 | Cma06g01001 | Cma-Chr6:6777916 | 3.34E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36359 | PF04618 | HD-ZIP_N | 1.30E-28 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma14g02146 | K09338 | - | csv:101222132 | 416.387 |