Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g02146 ATGGGCGGTAGAGATGACGAGTTGCGGCTGACTTTGAGTTTAGGGTTGGGAGTTCCGACTCGGCCTTCTTTTCAGCCGACTCACATTCACAGGCCATCGCACTCCATGCATAATCACATCCGCAATGGTTCTTGGAATGAGCTCTTTCAATTTTCTGATCGAAATGCCGATTCTAGGTCGTTTCTTAGGGGCATCGACGTGAATCGGCTGCCGACTGTCGTGGACGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACCGTTTCTAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCCGAGGCGGAGGCGGAGGCCGAGGCTGAGAGAGCCTCGTGCTCACAAGGGAGCGACGATGAAGACGGCGGAGGTGGCGACGCCTCGAGAAAGAAGCTGAGGCTATCAAAGGAACAGTCGATGGTTCTTGAGGAGACCTTCAAAGAGCACAATACTCTCAATCCAAAGCAAAAGCTGGCACTTGCAAGGCAGCTGAATCTGAGACCGAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACGAAACTGAAGCAGACAGAAGTGGATTGCGAGTACTTGAAGAGGTGCTGCGAGAATCTAACAGGGGAGAACAGAAGGCTGCAGAAGGAGGTGCAGGAGTTGAGAGCGCTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCTACCACCCTCACCATGTGTCCTCAGTGTGAGCGTGTGGCAGTTTCCTCATCTTCTTCCACCACCTGCCATCCAGCAGCGGCTGCTGGTGTACAGCGTCCCTCCATGCCCATCAAACCCATGGGCGGCGGTGTTGCCGATTGA 837 53.76 MGGRDDELRLTLSLGLGVPTRPSFQPTHIHRPSHSMHNHIRNGSWNELFQFSDRNADSRSFLRGIDVNRLPTVVDGEEENGVSSPNSTVSSISGKRSEREAEAEAEAEAERASCSQGSDDEDGGGGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTGENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTTCHPAAAAGVQRPSMPIKPMGGGVAD 278
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
14 14697711 14699591 - CmaCh14G021460.1 Cma14g02146 309129
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma14g02146 278 CDD homeodomain 130 187 IPR001356 GO:0003677
Cma14g02146 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 5 259 - -
Cma14g02146 278 Coils Coil 199 219 - -
Cma14g02146 278 SUPERFAMILY Homeodomain-like 117 187 IPR009057 -
Cma14g02146 278 SMART HOX_1 128 190 IPR001356 GO:0003677
Cma14g02146 278 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Cma14g02146 278 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Cma14g02146 278 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Cma14g02146 278 MobiDBLite consensus disorder prediction 95 131 - -
Cma14g02146 278 Pfam HD-ZIP protein N terminus 1 100 IPR006712 GO:0005634
Cma14g02146 278 Gene3D - 124 191 - -
Cma14g02146 278 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Cma14g02146 278 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Cma14g02146 278 MobiDBLite consensus disorder prediction 255 278 - -
Cma14g02146 278 MobiDBLite consensus disorder prediction 79 94 - -
Cma14g02146 278 MobiDBLite consensus disorder prediction 76 131 - -
Cma14g02146 278 PANTHER - 5 259 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cma14g02146 Cma17g00057 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00798 Cma-Chr6:4195958 Cma14g02146 Cma-Chr14:14697711 4.63E-82 dispersed
Cma14g02146 Cma-Chr14:14697711 Cma16g01122 Cma-Chr16:8618431 2.44E-99 dispersed
Cma14g02146 Cma-Chr14:14697711 Cma06g01001 Cma-Chr6:6777916 3.34E-140 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36359 PF04618 HD-ZIP_N 1.30E-28 No_clan Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g02146 K09338 - csv:101222132 416.387