Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g02156 ATGGTGGGGGTGAAAGGACTAGGATTCTCGAAGGTGGTTCTGCGGTCGGTGTTTTTGAATTTCACTCTCTCTCCGTCTTTCCTTTCTACAGAAATCAAGGCCAGCCAGGAGTATTTTGGATATTTGGGGTGTTTGAGAATGGATAAAGTCGAGTTGAGCGGTGTGTACGACGACGCCATGGATATGGACTTGGACTTGGACCTGGACTTGGTCTTGGATGAAGATGATCGGACAAAGAGGAAGAAAATCAAGAATCAGACAGTGGACATAGAGATGAAACATATTCACCACGCCGACGAAGATGGATCACACAAGCTTTTCCCGAAACAGGCGCTTAGTGTTCTGCTTGTTGAAGCTGATGATTCTACTCGCCGGATCATCGCCGCGCTTCTTCGTAAATGCAGTTACAGAGTCTATGCTGTTCCTGATGGACTGAAGGCATGGGAATGTTTGAAGGGAAGACCGCATAATATTGATCTCGTACTTACTGAAGTGGATTTGCCATCAATATCTGGTTATGCACTACTAACGTTAGTCATGGAGCACGACATTTGCAAAAATATTCCTGTTATAATGATGTCATCTTGCGACGCAGTTAGCATGGTCTTGAAGTGTATGTTAAAAGGTGCGGCTGATTTTCTTATTAAGCCAATTAGAAAAAATGAGCTCAAGAACCTTTGGCAGCATGTTTGGAGAAGGCACACGAAGATTAGTGGGAAATTTCCCTCCTATTTAACTGTTGGACAGCGTGAAGTTGTGGCCACTTCTGATAATGATGAAGGTAGCAATTATTCAAGTTACTGTGTGGCTTCTAGAAAGAAAATTAAGGAATGCAGTGAGAAGGGAAGTGATGCCCAGAGCTCTTGTACAACACCTTACTTGGAAGCTGAGAATAGATGCATGCCAAATATGCAGGGTCTGTCACCACTGAAGGATGGGACTGCTCCAAAGCTAAATATGAGTTGTAAGAAACGTGGATTTGGTGCTTATATGGACAAAGAATTTGATATACTTAAAACCAACATCAGAGATAAGTCGGATAATGTGGCCAAAAGTGAAGCTTGCAATTCAGTTCCTTCAAGAATGAAAGAAGATTGTGTTATTGCAGAAATAAGAAGCCAGAATAAAGTTTTGAGGCCTGACTTTTACAAGGTCGTCGATGATGGTGCTTCTGAGATGTTTAGTTACAACAATAAGGACACTGAACCTTCCAGGAGTATCAACGACTTGATAGGAAATTTTGACAATAATCGGAAGCACATCAATAGCATCTGCAAGTTTGATGAACATCAAAAGTGCTGGTTATCTAGCTCCAACGATGCCAGCGCAATCAAATTAGAATTTTCTCCTCAGTTGGAGCTTTCTTTAAGAAGTATTTCCCCGGCCAAACCAGAAGGCCAGTGGAGCGAAAATGGGCATGTGCTGAACCACTCCAATGCTTCAGCCTTTTCATCGTACAATAGCTGTAAGATGATGAAACCCCCTTCTGTGACACAACCCAATGCCCCTACTGAATCAGACACAAGTGCTGGTCAATCTCCTAGACCATTGCCAAGTCTACTGTCAGGAATTTCGGGTTGTACATACCAAGACCATGGAGTTCCAGTAAGAAACAGTCGGAAGAATATGACCCCAAAGGTTGCTGGCGGGTTTGACCAGGCTGAACATCAAATTCTGCAACCACAACTTGATCTTTTTCCAGATCCAGATTTGATATCTGATAAGGCTCCCGCTGGTCGTGTTCTCCATTCCATGTTCTACACGCCATCAGTCTTGCCTCGAGTTCCTAATACCAGATCAACATGTGAACAAGAGGTGTCTCCCATTTCTGTTGATACCTCATTCCATAACTGTCGTGATATTTCCAACCCGAGAAAAGTTGGTCATCAATATGTAGAAAACACAGATAATACTATTGAACGAGTGGCAGAGGAGTTGAAACATGACTCTCCTAGTGCTGCTACACATAGTGCCAGTAGTAGCTTATGCAATGAAACGGATCATATAAATAGCAACACGAATGGGAGCATTTGCAACCAAACAGAAGGCAACACCTCGTCAAGTGTAGTGGATGACAAGACTGCAGCCTCTGAAAATATGAATGCATCCAATGTCTTTACCTATGAAGGAAGTAAAGGACTGGATTCTTCTCGTTCCAGGCATAGGGAAGCCGCTCTGGAGAAGTTCAGGTTGAAACGGAAAGGTCGTTGTTATGAGAAAAAGGTCAGATATCAAAGCCGGAAAAGATTGGCAGAGCAGCGACCGCGAGTTAAAGGACAATTTGTACGTCAACGGCCTAGTGACCGACCAGCCTCGGACCCTGGATGTCGATGA 2334 43.53 MVGVKGLGFSKVVLRSVFLNFTLSPSFLSTEIKASQEYFGYLGCLRMDKVELSGVYDDAMDMDLDLDLDLVLDEDDRTKRKKIKNQTVDIEMKHIHHADEDGSHKLFPKQALSVLLVEADDSTRRIIAALLRKCSYRVYAVPDGLKAWECLKGRPHNIDLVLTEVDLPSISGYALLTLVMEHDICKNIPVIMMSSCDAVSMVLKCMLKGAADFLIKPIRKNELKNLWQHVWRRHTKISGKFPSYLTVGQREVVATSDNDEGSNYSSYCVASRKKIKECSEKGSDAQSSCTTPYLEAENRCMPNMQGLSPLKDGTAPKLNMSCKKRGFGAYMDKEFDILKTNIRDKSDNVAKSEACNSVPSRMKEDCVIAEIRSQNKVLRPDFYKVVDDGASEMFSYNNKDTEPSRSINDLIGNFDNNRKHINSICKFDEHQKCWLSSSNDASAIKLEFSPQLELSLRSISPAKPEGQWSENGHVLNHSNASAFSSYNSCKMMKPPSVTQPNAPTESDTSAGQSPRPLPSLLSGISGCTYQDHGVPVRNSRKNMTPKVAGGFDQAEHQILQPQLDLFPDPDLISDKAPAGRVLHSMFYTPSVLPRVPNTRSTCEQEVSPISVDTSFHNCRDISNPRKVGHQYVENTDNTIERVAEELKHDSPSAATHSASSSLCNETDHINSNTNGSICNQTEGNTSSSVVDDKTAASENMNASNVFTYEGSKGLDSSRSRHREAALEKFRLKRKGRCYEKKVRYQSRKRLAEQRPRVKGQFVRQRPSDRPASDPGCR 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14772231 14778535 - CmaCh14G021560.1 Cma14g02156 309139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g02156 777 MobiDBLite consensus disorder prediction 652 666 - -
Cma14g02156 777 Pfam CCT motif 722 764 IPR010402 GO:0005515
Cma14g02156 777 SMART REC_2 112 227 IPR001789 GO:0000160
Cma14g02156 777 Gene3D - 113 270 - -
Cma14g02156 777 MobiDBLite consensus disorder prediction 745 777 - -
Cma14g02156 777 MobiDBLite consensus disorder prediction 745 763 - -
Cma14g02156 777 ProSiteProfiles Response regulatory domain profile. 113 231 IPR001789 GO:0000160
Cma14g02156 777 CDD psREC_PRR 114 217 - -
Cma14g02156 777 MobiDBLite consensus disorder prediction 647 666 - -
Cma14g02156 777 ProSiteProfiles CCT domain profile. 722 764 IPR010402 GO:0005515
Cma14g02156 777 PANTHER TWO-COMPONENT RESPONSE REGULATOR 84 755 IPR045279 GO:0009736
Cma14g02156 777 MobiDBLite consensus disorder prediction 491 517 - -
Cma14g02156 777 Pfam Response regulator receiver domain 114 225 IPR001789 GO:0000160
Cma14g02156 777 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 84 755 - -
Cma14g02156 777 SUPERFAMILY CheY-like 112 237 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00464 Cma-Chr3:4713442 Cma14g02156 Cma-Chr14:14772231 1.26E-15 dispersed
Cma07g00944 Cma-Chr7:4542001 Cma14g02156 Cma-Chr14:14772231 1.29E-16 dispersed
Cma14g02156 Cma-Chr14:14772231 Cma13g01146 Cma-Chr13:8431403 3.66E-13 dispersed
Cma14g02156 Cma-Chr14:14772231 Cma15g00995 Cma-Chr15:5988212 1.11E-23 wgd
Cma14g02156 Cma-Chr14:14772231 Cma02g01147 Cma-Chr2:6760695 3.04E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36362 PF00072 Response_reg 1.10E-18 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g02156 K12130 - qsu:112004762 535.413