Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma14g02163 ATGGAGAGGCTCCAACCACCCCTTAAGCCTTGTTTTTATGGCGAATGTTCAGACAGAGTTTCTTCGGAACAAGAATTCACAAACTTGGGATTTGAAGAATTAGAAGATAAGATCCCATTCCTTCAGAAGCTGCAGAATGTGGAATCGCAGTCATTCAAGCAGCCTAACTTTCAAAACTTGGTGAAGCTGCAGCACTTCAACAAGCCAGGGGAAGAGGGAGTTGGTAAAATTCAAGACCTCCTACAGCTCTACTCTTCACCAATTAACTCAGAAACGAAGGACCAAAATGAACCTCCAAATTCCAAGGAAACAAGAAAACGAAAGAGATGGAAGGCAACAAAGAACAAGGAAGAAGTGGAGAGCCAAAGAATGACCCATATTGCCGTCGAGCGCAACCGGAGACGCCAAATGAACGACCATCTCCACGTTATCAAGTCCCTCATACCCACCTCCTATATACAAAGGGGTGATCAGGCATCGATAATTGGTGGTGCAATAGAGTTCGTGAAGGAATTGGAGCAGCTACTCGAAGTCTTGGAAGCACAGAGGAAAGGAAGGAAAGGAGTGGACGGTGGGTGTAAGGGTGCGCAATCAGAAGTGGGAATGGGCTCAAATGGAAGAATAGGAGAAGGAGTTTGCGCAGAGATGAAGTCAGAAGTGGGTGAGATAGAGGTTACCATGATTCAAACCCATGTAAGCTTGAAGATAAGATGCCCCAAAAGGCAAGGCCAATTGTTGAAAGCCATTGTTGGTTTGGAAGATCTTAGGCTCAGTGTTTTGCATCTCAACATTACTACCTCACAAGCCACTGCCACCATGCTTTACTCCTTCAATCTAAAGATAGAAGATGAATGTAAGCTAGGATCAGCGGAGCAGATTGCAGGAGCAGTTCATCAAATATTCAGTTTCATCAATGATGGCAGTCAAGTCAAGTCAATGAGGCGAAGGCAAATTTCAGGCAGGACAGTGGCAGTCGCTGACTATGGAAGGAAGGGGGGCCCCCCTTTCCTCCCCCCCTACTTCCCTTCCAAGAAAAAGGAAAGAAAAGAAGAAAGCAAATAA 1062 45.48 MERLQPPLKPCFYGECSDRVSSEQEFTNLGFEELEDKIPFLQKLQNVESQSFKQPNFQNLVKLQHFNKPGEEGVGKIQDLLQLYSSPINSETKDQNEPPNSKETRKRKRWKATKNKEEVESQRMTHIAVERNRRRQMNDHLHVIKSLIPTSYIQRGDQASIIGGAIEFVKELEQLLEVLEAQRKGRKGVDGGCKGAQSEVGMGSNGRIGEGVCAEMKSEVGEIEVTMIQTHVSLKIRCPKRQGQLLKAIVGLEDLRLSVLHLNITTSQATATMLYSFNLKIEDECKLGSAEQIAGAVHQIFSFINDGSQVKSMRRRQISGRTVAVADYGRKGGPPFLPPYFPSKKKERKEESK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14838337 14840857 + CmaCh14G021630.1 Cma14g02163 309146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma14g02163 353 Pfam Helix-loop-helix DNA-binding domain 122 173 IPR011598 GO:0046983
Cma14g02163 353 Gene3D - 101 187 IPR036638 GO:0046983
Cma14g02163 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 183 IPR036638 GO:0046983
Cma14g02163 353 MobiDBLite consensus disorder prediction 87 123 - -
Cma14g02163 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 172 IPR011598 GO:0046983
Cma14g02163 353 SMART finulus 127 178 IPR011598 GO:0046983
Cma14g02163 353 PANTHER TRANSCRIPTION FACTOR BHLH70 91 306 - -
Cma14g02163 353 PANTHER MAX DIMERIZATION, MAD 91 306 - -
Cma14g02163 353 MobiDBLite consensus disorder prediction 329 353 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00911 Cma14g02163 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00911 Cma-Chr6:5984115 Cma14g02163 Cma-Chr14:14838337 5.63E-126 dispersed
Cma14g01891 Cma-Chr14:13384125 Cma14g02163 Cma-Chr14:14838337 3.10E-52 dispersed
Cma14g02163 Cma-Chr14:14838337 Cma19g00230 Cma-Chr19:1582171 7.19E-53 dispersed
Cma14g02163 Cma-Chr14:14838337 Cma05g00515 Cma-Chr5:2458214 2.18E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36365 PF00010 HLH 1.40E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma14g02163 - - csv:101219379 454.136