Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00040 | ATGGCGGAAATGGATGGCTTGGTCATCGAGATCAACCTCGGGACTGTAGATGCCGGAAATGACGACGTCGCCGGAAAGACAACCGTAGGAAAAAAAGGCGAAAAAGGAATCCGCGCCGCATCGTTTTCACTCCTTGTTTCATCATCTGCCCACTATTTCAGACCTTCCTCTGCTCATTTTCAACTGTTCTTACTCTCACACTCAGTCCATTTTACTCTTATGATTGGTCAGCAGAGTATGAGCTCTTCATCAGCTCAGCTCTATGCATCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGTAATGCCTTCGGTACTCGACTCGATACCAGCATATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCTGAGTTCGTTCCTTTCGAATCGATGGATCATCACGAGAGCAGTCAAGAAACGAACAAGCCAGTTGATGATAAGGTACAACGACGTTTAACACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTACAGCAGTTAGAAACTAGCCGTTTGAAGCTGGAACAGTTAGAGCAGGAGCTAGAAAGAACCAGACAGAAGGGTGTATACACAGCAAGCTGCTTAGCAGATACCAGCCACTTGGGATTCAGCAGATTGGTAAACCCAGGGATTGCTGCATTTGAGATAGAATACAATCACTGGGTTGAAAAGCAAGAGAGACAGATCACTGAACTCAGAAAGGCATTGCAGCAAGTTCATATAACAACTGATACAGAACTCCAAATTTTAGTGGAAAGCGGCTTAAACCATTACCATAATCTGTTTTGCATTAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTATGGAGATCATCAGCAGAGCGTTTTTTCCTGTGGATTGGAGGATTTCGGCCATCGGAGCTGCTAAACGTGCTGACGCCATACTTTGAGGCATTAAATGAACAACAACAGAGCGCTATCCACAATTTGCAGCAGTCGTCTCGGCAAGCTGAAGACGCGCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGCGATCCTATAGGAAGCTATATTTCTGAGATGGGCGATGGAATGGAGAAAGCAGAAGCATTGGAGAGCTTGGTAAGGCAGCCGAGTGTGTGCTACTCTTTTCTGGAACAGGCAGACCATCTGAGGCAACAAACTTTGAAGAGAATGTCCCACATCCTAAGTACCAAACAAGCGGCGCAAGGGTTGCTCGCTTTAGGCGAGTACTTCCACCGTCTCCGTATTCTGAGCTCCCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG | 1350 | 46.22 | MAEMDGLVIEINLGTVDAGNDDVAGKTTVGKKGEKGIRAASFSLLVSSSAHYFRPSSAHFQLFLLSHSVHFTLMIGQQSMSSSSAQLYASRMGIYEPFHQINSWGNAFGTRLDTSISPIIKVDDCVDNKPEFVPFESMDHHESSQETNKPVDDKVQRRLTQNREAARKSRMRKKVYVQQLETSRLKLEQLEQELERTRQKGVYTASCLADTSHLGFSRLVNPGIAAFEIEYNHWVEKQERQITELRKALQQVHITTDTELQILVESGLNHYHNLFCIKANAAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLTPYFEALNEQQQSAIHNLQQSSRQAEDALSQGMEKLHQNLSLSIASDPIGSYISEMGDGMEKAEALESLVRQPSVCYSFLEQADHLRQQTLKRMSHILSTKQAAQGLLALGEYFHRLRILSSLWATRPREPA | 449 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 223090 | 226589 | - | CmaCh15G000400.1 | Cma15g00040 | 309190 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00040 | 449 | Coils | Coil | 173 | 200 | - | - | |
| Cma15g00040 | 449 | Pfam | Seed dormancy control | 241 | 318 | IPR025422 | GO:0006351|GO:0043565 | |
| Cma15g00040 | 449 | SUPERFAMILY | Leucine zipper domain | 154 | 197 | IPR046347 | GO:0003700|GO:0006355 | |
| Cma15g00040 | 449 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 157 | 172 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma15g00040 | 449 | Coils | Coil | 235 | 255 | - | - | |
| Cma15g00040 | 449 | Gene3D | - | 153 | 202 | - | - | |
| Cma15g00040 | 449 | ProSiteProfiles | DOG1 domain profile. | 224 | 444 | IPR025422 | GO:0006351|GO:0043565 | |
| Cma15g00040 | 449 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 152 | 196 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma15g00040 | 449 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 80 | 448 | - | - | |
| Cma15g00040 | 449 | SMART | brlzneu | 150 | 214 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma15g00040 | 449 | Coils | Coil | 325 | 345 | - | - | |
| Cma15g00040 | 449 | Pfam | bZIP transcription factor | 153 | 194 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma15g00040 | 449 | PANTHER | TRANSCRIPTION FACTOR TGA7 | 80 | 448 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma15g00040 | Cma-Chr15:223090 | Cma16g00670 | Cma-Chr16:3493420 | 8.94E-120 | dispersed | |
| Cma15g00040 | Cma-Chr15:223090 | Cma04g03005 | Cma-Chr4:19651845 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36368 | PF14144 | DOG1 | 6.90E-28 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00040 | K14431 | - | csv:101217648 | 623.239 |