Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00098 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTATACCTGAACGGCGTGCAATGCGAGTTCATGCAGCACGTCCTGTTAACTCGAACTCACTTGTCTTTCTTGTCACAGTACTTTTGTTGTTCATGATGTTAAATTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTGATGGCTACAACATTAAGGATGTATGCGACCTGTCAACAACTTCAGGCTCAAGCTCAAGCTAGAGCTATGGCAGCTAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCTACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGGGAATTTGATGATTTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTGAACCAGCAGGCTTCATCTTCAGAGTCTAATGAGAAGAGACAAGATTCAGCTAATGCAGTTGGCAGTACCAAGGCCTCGGAGGATGAACTTACGTGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCGTACGTAGTCTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCAACAGCAGGGCACGTGCCCTGTTTGTAAATTCAGAGCGGTGTCTGGGTGGTCAGAACAGGGACAAGGGGAAACCGATGCGTATTCGGTTTGA 828 45.05 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLVFLVTVLLLFMMLNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANCIDPWLQQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 462268 464237 - CmaCh15G000980.1 Cma15g00098 309248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00098 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 260 IPR013083 -
Cma15g00098 275 MobiDBLite consensus disorder prediction 171 205 - -
Cma15g00098 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Cma15g00098 275 SMART ring_2 214 254 IPR001841 -
Cma15g00098 275 CDD RING-H2_PA-TM-RING 213 255 - -
Cma15g00098 275 Pfam Ring finger domain 213 255 IPR001841 -
Cma15g00098 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 273 - -
Cma15g00098 275 SUPERFAMILY RING/U-box 208 261 - -
Cma15g00098 275 PANTHER TARGET OF ERK KINASE MPK-1 1 273 - -
Cma15g00098 275 MobiDBLite consensus disorder prediction 176 205 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02947 Cma15g00098 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01262 Cma-Chr6:8390476 Cma15g00098 Cma-Chr15:462268 2.10E-14 dispersed
Cma11g01909 Cma-Chr11:12620785 Cma15g00098 Cma-Chr15:462268 1.10E-12 dispersed
Cma12g01162 Cma-Chr12:9167513 Cma15g00098 Cma-Chr15:462268 3.92E-12 dispersed
Cma14g01878 Cma-Chr14:13298814 Cma15g00098 Cma-Chr15:462268 7.13E-14 dispersed
Cma15g00098 Cma-Chr15:462268 Cma14g02015 Cma-Chr14:14098883 2.20E-13 dispersed
Cma15g00098 Cma-Chr15:462268 Cma04g02947 Cma-Chr4:19411306 1.21E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00098 K16283 - csv:101216306 476.478