Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g00098 | ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTATACCTGAACGGCGTGCAATGCGAGTTCATGCAGCACGTCCTGTTAACTCGAACTCACTTGTCTTTCTTGTCACAGTACTTTTGTTGTTCATGATGTTAAATTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTGATGGCTACAACATTAAGGATGTATGCGACCTGTCAACAACTTCAGGCTCAAGCTCAAGCTAGAGCTATGGCAGCTAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCTACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGGGAATTTGATGATTTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTGAACCAGCAGGCTTCATCTTCAGAGTCTAATGAGAAGAGACAAGATTCAGCTAATGCAGTTGGCAGTACCAAGGCCTCGGAGGATGAACTTACGTGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCGTACGTAGTCTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCAACAGCAGGGCACGTGCCCTGTTTGTAAATTCAGAGCGGTGTCTGGGTGGTCAGAACAGGGACAAGGGGAAACCGATGCGTATTCGGTTTGA | 828 | 45.05 | MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLVFLVTVLLLFMMLNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANCIDPWLQQQGTCPVCKFRAVSGWSEQGQGETDAYSV | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 462268 | 464237 | - | CmaCh15G000980.1 | Cma15g00098 | 309248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g00098 | 275 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 260 | IPR013083 | - | |
Cma15g00098 | 275 | MobiDBLite | consensus disorder prediction | 171 | 205 | - | - | |
Cma15g00098 | 275 | ProSiteProfiles | Zinc finger RING-type profile. | 214 | 255 | IPR001841 | - | |
Cma15g00098 | 275 | SMART | ring_2 | 214 | 254 | IPR001841 | - | |
Cma15g00098 | 275 | CDD | RING-H2_PA-TM-RING | 213 | 255 | - | - | |
Cma15g00098 | 275 | Pfam | Ring finger domain | 213 | 255 | IPR001841 | - | |
Cma15g00098 | 275 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SDIR1 | 1 | 273 | - | - | |
Cma15g00098 | 275 | SUPERFAMILY | RING/U-box | 208 | 261 | - | - | |
Cma15g00098 | 275 | PANTHER | TARGET OF ERK KINASE MPK-1 | 1 | 273 | - | - | |
Cma15g00098 | 275 | MobiDBLite | consensus disorder prediction | 176 | 205 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02947 | Cma15g00098 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01262 | Cma-Chr6:8390476 | Cma15g00098 | Cma-Chr15:462268 | 2.10E-14 | dispersed | |
Cma11g01909 | Cma-Chr11:12620785 | Cma15g00098 | Cma-Chr15:462268 | 1.10E-12 | dispersed | |
Cma12g01162 | Cma-Chr12:9167513 | Cma15g00098 | Cma-Chr15:462268 | 3.92E-12 | dispersed | |
Cma14g01878 | Cma-Chr14:13298814 | Cma15g00098 | Cma-Chr15:462268 | 7.13E-14 | dispersed | |
Cma15g00098 | Cma-Chr15:462268 | Cma14g02015 | Cma-Chr14:14098883 | 2.20E-13 | dispersed | |
Cma15g00098 | Cma-Chr15:462268 | Cma04g02947 | Cma-Chr4:19411306 | 1.21E-165 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g00098 | K16283 | - | csv:101216306 | 476.478 |