Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00103 ATGGCGAATAGATGGTGGGGTGGAATTGGGAATCTTACAATGATACGGCTTGATTCTTTATCTTCCTTTGATCCTAAAAACCCAGAAGATGAAAACCAAGAAGAACAACAACAACAGCAGCAACAACGTGATGCTAAGAATGAAGATCATCATGGAGTCAAAACCAAGAGGCGGCCGCGAGGGCGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTCATCACCAAACACACTCCCAACGCCCTACAAAGCCACGTCTTCGAAATCACTACTGCCACCGACATTGCCCACTCCATTTCCACCTTCGCCCACCGCCGTCACCGTGGAGTCTCCATTCTCAGCGCAACCGGTGTCGTCGCCGACGTCACTCTTCGCCAGCCCGCCGGCGTCATCACGCTCCACGAACGATTCGAGATCTTGTCTCTCTCCGGCGCTTTCCTTCCCGCGCCGTCTCCCCACGGGGCTACCGGCTTGACCGTCTATCTCGCGGGCGGCCATGGCCGGGTCGTCGGTGGGCTGGTCGCCGGCCCCCTCATCGCCGCTGGTACCGTCATAGTGGTTGCAGCTTCATTTACCAACGCTATGTATGAAAGATTACCGATGGAGGATGATGATGAAGAGAATGCGAAGGAGGAGAAGCAGTCGGAAGATCATATTAATGCAAATAATTCAGGGGGAGAAGCATCAGCAGCAGCAGCTTCGTTGCCAGTTTATGATTTGATTCCACAAACTCAAATTTCACAAGATATGTTTTGGGCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCATCTTATTAA 804 52.49 MANRWWGGIGNLTMIRLDSLSSFDPKNPEDENQEEQQQQQQQRDAKNEDHHGVKTKRRPRGRPPGSKNKPKPPIVITKHTPNALQSHVFEITTATDIAHSISTFAHRRHRGVSILSATGVVADVTLRQPAGVITLHERFEILSLSGAFLPAPSPHGATGLTVYLAGGHGRVVGGLVAGPLIAAGTVIVVAASFTNAMYERLPMEDDDEENAKEEKQSEDHINANNSGGEASAAAASLPVYDLIPQTQISQDMFWAPLPPPPPPPPSY 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 479122 479925 - CmaCh15G001030.1 Cma15g00103 309253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00103 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 206 - -
Cma15g00103 267 MobiDBLite consensus disorder prediction 19 80 - -
Cma15g00103 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 264 IPR014476 GO:0003680
Cma15g00103 267 ProSiteProfiles PPC domain profile profile. 81 217 IPR005175 -
Cma15g00103 267 Gene3D - 85 216 - -
Cma15g00103 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 264 - -
Cma15g00103 267 MobiDBLite consensus disorder prediction 23 54 - -
Cma15g00103 267 MobiDBLite consensus disorder prediction 202 229 - -
Cma15g00103 267 CDD DUF296 87 193 IPR005175 -
Cma15g00103 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 195 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01169 Cma15g00103 CCT
Cma04g00200 Cma15g00103 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00020 Cma-Chr9:119736 Cma15g00103 Cma-Chr15:479122 4.40E-64 dispersed
Cma09g00592 Cma-Chr9:2739782 Cma15g00103 Cma-Chr15:479122 1.19E-42 dispersed
Cma14g01795 Cma-Chr14:12942583 Cma15g00103 Cma-Chr15:479122 3.82E-66 dispersed
Cma15g00103 Cma-Chr15:479122 Cma17g00027 Cma-Chr17:116958 4.96E-58 dispersed
Cma19g00242 Cma-Chr19:1713777 Cma15g00103 Cma-Chr15:479122 6.01E-67 dispersed
Cma15g00103 Cma-Chr15:479122 Cma04g02941 Cma-Chr4:19395948 1.62E-87 wgd
Cma15g00103 Cma-Chr15:479122 Cma04g01169 Cma-Chr4:5964845 8.85E-74 wgd
Cma15g00103 Cma-Chr15:479122 Cma04g00200 Cma-Chr4:955547 2.00E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00103 - - cmos:111444826 436.417