Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00106 ATGAAAAAAGAAGTTGCTGGGTGTCAGGCGGGCGAGGGGAAACTTTCGGCCGAATATCTTAGGCCTTACAGATCATGCGTCTACGTCGGCCACTGCTCTTTAAAATTCTTCCATTCCGATGTTTCCACTCTAAGCCTCACACACACACACACATATATACACATCTATATATATTCTTCAACCTTTTTCCATCTTCGTAAATATTTTTATTTTAATTCAAATCCCATTTTTCACCGCAATAACATGGCTGAGATTTGCTTTGCTGGAGATGGCGAGCCCTCTCCCCGACCAAAATCTCGACCCCGAAACTCGGCTCGCCGAACGAAGGAGCTTCTTCAGCACAATGCCGCTGCCGATGAATCTGCTTCGTCGTCGTCGTCGTCGTCGTCGTCGCCGTCTACGCCGCCCTCACACCAGGGACGGAAACGCCGCGGTGTTCATCATTCCCTCCGGCGGTGCAAAAAAGTGGATAATAGTGTTGATGGTGTGGAGACGGCTAAATATGGGGTCACCTCTGTTTGCGGAAGAAGAAGAGAAATGGAAGACACGGTTTCGGTTCATCCATGCTTTGCTACTCACAGAAATCAACCCCAAATTCCCCTTCACTTTTTTGGGGTCTTCGACGGCCATGGCTGCTCTCATGTGTCAGTGAGGTGCGAAAATCGAATGCATGAAATATTGAAGGAAGAGATTGAAAGCGAATTAGGAGAATCAATGGAGTGGAAGACATTGATGCAACGAAGCTTTGGGCGTATGGATGAGGAAGTCAAGGAGTACTGCCATCACGACGACGACGACGACGACGACGACGACGACAAAAATAAAAATACTGTTAGTTGCAGATGCAAACTCCAGACTCCTCGCCAATACGACACCGTTGGATCAACCGCTCTGGTTGCCATCGTAACGCCCCACCAGCTCATCATCTCCAACTGCGGCGATTCCCGCGCCGTGCTTTGCCGTAAAACTAGTGTCCTCCCCCTCTCCTCCGATCATAAGCCAGATCGACCGGACGAATTGTCTCGTATAGAATCGAGAGGCGGGCGAGTGATTTACTGGGACGGGGCGAGAGTGTTGGGAGTTTTAGCTATGTCAAGAGCCATAGGAGATGGTTATCTAAAACCGTACGTGATATCGGAGCCAGAGGTGGTGGAGGTGGATCGGACCGGGGAGGATGAGTTCTTAATCTTGGCCACCGATGGCCTGTGGGACGTCGTTTCCAATGAAACAGCGTGCGACGTCGTTCGAACGTGCATGCGGGCTCCGCCGGCGTCCACATCATCGTTGAGCGGCAGTGACAAAACTTGCTCCGACGCCTCCATTGTGCTGACGAAGTTGGCCATGGCGAAGCATAGCTCAGATAACATTAGCGTAGTGGTCATAGATTTGAGAAGAGATGTCACCGAACTCTAA 1413 50.39 MKKEVAGCQAGEGKLSAEYLRPYRSCVYVGHCSLKFFHSDVSTLSLTHTHTYIHIYIYSSTFFHLRKYFYFNSNPIFHRNNMAEICFAGDGEPSPRPKSRPRNSARRTKELLQHNAAADESASSSSSSSSSPSTPPSHQGRKRRGVHHSLRRCKKVDNSVDGVETAKYGVTSVCGRRREMEDTVSVHPCFATHRNQPQIPLHFFGVFDGHGCSHVSVRCENRMHEILKEEIESELGESMEWKTLMQRSFGRMDEEVKEYCHHDDDDDDDDDDKNKNTVSCRCKLQTPRQYDTVGSTALVAIVTPHQLIISNCGDSRAVLCRKTSVLPLSSDHKPDRPDELSRIESRGGRVIYWDGARVLGVLAMSRAIGDGYLKPYVISEPEVVEVDRTGEDEFLILATDGLWDVVSNETACDVVRTCMRAPPASTSSLSGSDKTCSDASIVLTKLAMAKHSSDNISVVVIDLRRDVTEL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 484972 486872 + CmaCh15G001060.1 Cma15g00106 309256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00106 470 Gene3D - 163 468 IPR036457 -
Cma15g00106 470 SUPERFAMILY PP2C-like 166 464 IPR036457 -
Cma15g00106 470 ProSitePatterns PPM-type phosphatase domain signature. 203 211 IPR000222 GO:0043169
Cma15g00106 470 SMART PP2C_4 157 461 IPR001932 -
Cma15g00106 470 MobiDBLite consensus disorder prediction 113 154 - -
Cma15g00106 470 ProSiteProfiles PPM-type phosphatase domain profile. 167 463 IPR001932 -
Cma15g00106 470 Pfam Protein phosphatase 2C 167 456 IPR001932 -
Cma15g00106 470 PANTHER PROTEIN PHOSPHATASE 2C 3 430 466 - -
Cma15g00106 470 PANTHER PROTEIN PHOSPHATASE 2C 3 114 425 - -
Cma15g00106 470 PANTHER ALPHABET, ISOFORM E-RELATED 114 425 - -
Cma15g00106 470 PANTHER ALPHABET, ISOFORM E-RELATED 430 466 - -
Cma15g00106 470 CDD PP2Cc 167 463 IPR001932 -
Cma15g00106 470 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00625 Cma-Chr1:3268907 Cma15g00106 Cma-Chr15:484972 3.80E-119 dispersed
Cma15g00106 Cma-Chr15:484972 Cma16g00062 Cma-Chr16:273810 1.10E-81 dispersed
Cma15g00106 Cma-Chr15:484972 Cma18g01202 Cma-Chr18:9526783 2.33E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00106 K14497 - csv:101220425 435.647