Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00109 ATGGCATCCTTTTCCAGACGCCTACTCCTCTTTGCGGCGGTGCTACTCGCCGCCGCTAAAATCGCAACCTCCGCCAACCGATGCCCAGACTGCGGAGGTACCGGCGTTCCCTATCCTCTGAGCACCAGCCCCACATGTGGGGATCAATCGTACAAGATCCGGTGCGACGCAGGCTCACTGAAATTCGATACGCTGAACAATACGTACCCGATCATCGCGATCAACCCATCGGCCCAACGGCTGGTGATCCGCCCATCTAACTTCCTCCGAGAAACGTGCGTGACAGAGGATATTGCTCACGGAGGAATCCTACTGAACAACAGTTTACCCTTCAACGTCACGAGCGGGAACACGATCCTATACTTCAACTGCACGGATTCGCTTCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGTTTGTGCCATTCGTACATCAACGGCTCGAGAGGAGCGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCGGGTGGGTCATCGAATTCGTACATGATTCGGGTGATGGAGTCGGGGTGCAGCGCGTACACGAGCTTTGTGAACTTGAACCCGAGTTTGGGACTGTTGCAATGGCCTGAACCCGGGTTGGAGCTGCAGTGGCTTTCGCCGATGGAGCCGATTTGTAATACGCAGGCTGATTGTGATGGGAACGCGGCTTGTGGTGTTGACCCAAGTGGGACCGGGTTGAAACGTTGCCTCTGTAATTCAGGGTTTCAGTGGGACCCTATTGCTGGAATCTGCTCTCAAAACACGTGTCATGATCCTGACGGTTGCAAGAAGTCCCGAACTGCACTAATAGCCGGCATTGTATCCGGCGTCGGCGCGGCGGTGTTATTGTCAATAATAGCCATGTTAGTATATAGACGACATAGAAGAGCGAAAGAAGCTCAAGAAGCTCAAGATCGCTTAACAAAGGAGCGTGAAGCAATTCTGAACTCCAACGGCGGAGGCGGAAGGAACGCAAAGATCTTCTCCGGAAAAGAGATCAAGAGGGCCACCCACAATTTCTCCGCCGATCGCCTTCTGGGTGCCGGCGGCTATGGTGAGGTCTACAAAGGCATTCTTGGGGACGGTACCCCTGTAGCTGTGAAGTGCGCCAAGCTCGGAAACGCAAAAGGCACCGACCAAGTCCTGAATGAGGTCCGAATCCTCTGCCAAGTTAACCACCGGAGTCTTGTGTGGCTCCTTGGGTGCTGCGTTGAATTAGAGCAGCCAATTCTGGTGTACGAGTATATCCCCAACGGCACTCTTCTGGACCATTTGCAAGGTAGTAAAGAGACAAGGGCATTAACATGGGAGCAGCGGCTCCAGATCGCGCAGAGCACAGCAGAGGGACTAGCATACCTTCATTTCTCAGCAGTTCCACCAATCTACCACCGAGACGTGAAATCCAGCAACATCCTACTAGACAATAAGCTAAACTCCAAAGTTTCGGATTTCGGCCTCTCCCGATTGGCGGAAACTGATTTAAGCCATATCTCAACTTGCGCGCAGGGTACTCTGGGGTACCTGGACCCCGAGTACTACCGGAACTACCAGTTGACTGACAAGAGCGACGTGTACAGTTTCGGAGTGGTTCTGCTGGAGCTGTTGACGTCGCAGAAGGCCATCGATTTCAACCGGGAGCCTGACGACGTGAACTTGGCGGTATATGTGCAGCGGATGGTGGAAGAAGAGAAATTGGTGGATGCCATCGATCCGAGGCTGAAGAAGGGAGCCACGGACATGGAGGTTGACACGATGAAGGCTTTGGGGTTTCTGGCAGTGGGATGCTTGGAAGAGAGAAGGCAGAATCGGCCTTCCATGAAAGAAGTGGTGGAGGAGATTCAGTACATCATAAGCGTCGCCACTGCCAAGCCTTGA 1887 54.11 MASFSRRLLLFAAVLLAAAKIATSANRCPDCGGTGVPYPLSTSPTCGDQSYKIRCDAGSLKFDTLNNTYPIIAINPSAQRLVIRPSNFLRETCVTEDIAHGGILLNNSLPFNVTSGNTILYFNCTDSLLRSPLNCSSTSLCHSYINGSRGAAACEAAPLCCTFRAGGSSNSYMIRVMESGCSAYTSFVNLNPSLGLLQWPEPGLELQWLSPMEPICNTQADCDGNAACGVDPSGTGLKRCLCNSGFQWDPIAGICSQNTCHDPDGCKKSRTALIAGIVSGVGAAVLLSIIAMLVYRRHRRAKEAQEAQDRLTKEREAILNSNGGGGRNAKIFSGKEIKRATHNFSADRLLGAGGYGEVYKGILGDGTPVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVWLLGCCVELEQPILVYEYIPNGTLLDHLQGSKETRALTWEQRLQIAQSTAEGLAYLHFSAVPPIYHRDVKSSNILLDNKLNSKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNREPDDVNLAVYVQRMVEEEKLVDAIDPRLKKGATDMEVDTMKALGFLAVGCLEERRQNRPSMKEVVEEIQYIISVATAKP 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 493811 495993 + CmaCh15G001090.1 Cma15g00109 309259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00109 628 SUPERFAMILY Protein kinase-like (PK-like) 329 616 IPR011009 -
Cma15g00109 628 ProSiteProfiles Protein kinase domain profile. 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00109 628 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Cma15g00109 628 Gene3D Phosphorylase Kinase; domain 1 320 419 - -
Cma15g00109 628 PANTHER OS05G0318100 PROTEIN 17 625 - -
Cma15g00109 628 SMART serkin_6 344 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00109 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Cma15g00109 628 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 625 IPR045274 GO:0007166
Cma15g00109 628 Pfam Protein tyrosine and serine/threonine kinase 347 616 IPR001245 GO:0004672|GO:0006468
Cma15g00109 628 Coils Coil 301 321 - -
Cma15g00109 628 CDD STKc_IRAK 350 618 - -
Cma15g00109 628 Gene3D Transferase(Phosphotransferase) domain 1 420 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00735 Cma-Chr7:3250356 Cma15g00109 Cma-Chr15:493811 2.02E-92 dispersed
Cma15g00109 Cma-Chr15:493811 Cma04g02407 Cma-Chr4:16624131 1.71E-88 dispersed
Cma01g01026 Cma-Chr1:7541931 Cma15g00109 Cma-Chr15:493811 5.26E-97 transposed
Cma05g01089 Cma-Chr5:8587442 Cma15g00109 Cma-Chr15:493811 1.71E-41 transposed
Cma06g00427 Cma-Chr6:1967253 Cma15g00109 Cma-Chr15:493811 0 transposed
Cma10g00815 Cma-Chr10:3801009 Cma15g00109 Cma-Chr15:493811 4.81E-79 transposed
Cma15g00643 Cma-Chr15:3040061 Cma15g00109 Cma-Chr15:493811 5.44E-78 transposed
Cma15g00109 Cma-Chr15:493811 Cma07g01010 Cma-Chr7:5236317 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69123 PF07714 PK_Tyr_Ser-Thr 1.80E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00109 - - csv:101220186 1076.62