Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00118 ATGACGACCACTCAAAACTCCCACGTTGTCGCAATGGAGGTAGGAGAAGTAGAACAGCCTAGCCGGACTTCAGCCGCCGGCGCTGACGCCTTACTAGCCTCCGACGATGTGCGGCAGTGCTCGGGGCAGTCGAGGGCTGAGATTGTGGGGGCGGCGGCGGAGAAAAGAAGGGAATCCTCTGCGTCGGAGTGCTCTGTAGAGATGGATCTGGAATGTGGGTTGTCTGAGATTAAGGTACATTTGACGAAAATGGGGAGGGATTGTCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCAGGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGCAAGGACGATTTGGCTGCTGCTCATAAGCACTGTGCTGAAGCTTGGTTCAAGATCAAGGGCGACATTGGCCGCCATTACAAGTCCCATCAGCGTTTTCTTAGGATCCATCAACGCAACGACTCAAACGACGAAACGACCGCAACCACAGCAGCAGCTGTGGTAGTGCCACCACACTCTATAGAGGCTCGGAACTTCTGGCAGGGCCATAGGTTCCTGAATTTCTTACTCGCGTGCATGCTATCTCTTCATTCTGCAACAGCTCGAAAGGTCGACTATATCGTGTCGTTACCAGCTCGAAAGCTCCCTGAAATGGAAGTGTCTGTAATTGATGTTCGAAAAGATGCCGGAACCACTCAGCCTAGCTGGATAATTCCCTGTTTAGATTCCGAGATGTAG 732 51.5 MTTTQNSHVVAMEVGEVEQPSRTSAAGADALLASDDVRQCSGQSRAEIVGAAAEKRRESSASECSVEMDLECGLSEIKVHLTKMGRDCRICHLSLDASNQESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDIGRHYKSHQRFLRIHQRNDSNDETTATTAAAVVVPPHSIEARNFWQGHRFLNFLLACMLSLHSATARKVDYIVSLPARKLPEMEVSVIDVRKDAGTTQPSWIIPCLDSEM 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 544739 550014 - CmaCh15G001180.1 Cma15g00118 309268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00118 243 ProSiteProfiles Zinc finger RING-CH-type profile. 80 147 IPR011016 GO:0008270
Cma15g00118 243 SMART ringv_2 87 135 IPR011016 GO:0008270
Cma15g00118 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 157 IPR013083 -
Cma15g00118 243 Pfam RING-variant domain 88 130 IPR011016 GO:0008270
Cma15g00118 243 SUPERFAMILY RING/U-box 85 133 - -
Cma15g00118 243 PANTHER ZINC FINGER, RING-CH-TYPE 18 193 - -
Cma15g00118 243 PANTHER OS01G0850200 PROTEIN 18 193 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02928 Cma15g00118 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00118 Cma-Chr15:544739 Cma01g01329 Cma-Chr1:9492264 1.98E-08 dispersed
Cma14g00100 Cma-Chr14:436891 Cma15g00118 Cma-Chr15:544739 1.22E-47 wgd
Cma15g00118 Cma-Chr15:544739 Cma04g02928 Cma-Chr4:19321576 6.35E-92 wgd
Cma15g00118 Cma-Chr15:544739 Cma06g00260 Cma-Chr6:1296853 3.39E-51 wgd
Cma15g00118 Cma-Chr15:544739 Cma07g01034 Cma-Chr7:5397563 7.83E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00118 - - cpep:111788319 268.855