Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00119 ATGGAAATTTTGTTGTTTTCTCTGAGGATTTGTGTTAAGCTGAAGAGTTTTACGACGACAGTGGGTCAAAGACGAGACGTGGTAAAATCGCCTAAATTAGCAAATCCCTTATTTGTGGGATTAAGCTCGTGGACTAGCAAGTCAACTGAGTGGAGCAGTGTGTTTTCGTGGCGATTTGGTCTGAGAAATGTCCCCAAATGGATGCATTCGTTGCCGGTAGATCCACGGCGGCATTCCGATAAACAGGATCATCTTCGGCCTCTAACCATTTTTGCTGGGCTGATCTTTTTTGCAACTGGGTACGGTGCGTTAATGGCGTTTTTGGTGCTGTTCATATGGGCAATTACGAGGAATAGAAATGCCATCTTTGGAGCCAAGCCCCAAAGTTCGGATTTTCAGTACGAAAGGGTTAGCGTAGTTGTAGCGGAGGGATTCAAAGATTATCTCCGAAGAGAAATGTGTCGGAAAGTAGACAGCATTCCTATCTTGTTTTTATCACAAACAAGGAATCAACGCCGTCCTAAACCCGATTTTCTAACGCTATACTCTTTCACGCTCTCATTCTCTCCATCTTCCACCTCTTCCTCCTCGCTATCGCCGCCGCCGCCGCCTGTCTCCCTCTCGCACCCACACGTTCTGGTTCGTCAAGCTCGCGTTTATGCTGATCCAGGTAGCTTGCTCTTGGGGTTTCCTCGCATCGTTGAGAAGGGAATGGCGAAGTTCAGGGATAGGACTGAAGATTTTAAAGATGTTGTGCGGCACTGTGCTATTTCTTTAGAGTATAACGAGTCCAAGTTGGCGGCTATTCTGGCATCTTTCATCATTCAAAAACCTCGGCAAAGGTCACCTTTTATCAAAGCTGCCCTAAAAACGCTTGAAAGCATTGGTGCTCTTGAAGAGTTTATGTTGAAACATCAAAAGGACTATGTGGATATGTATCGTACGACAGATCAAGAGAGAGACAATATTGAACACGAGGTAACTGCCTTCATCAAAGCATGCCAAGAACAACTTGATATCCTAAAAAACAACATAAATGAGGATGATGCTCACTCAAAGGGATGGCTTGGTTCTAGGACTGATGATTCTAATGCTGATACTATTGCACACAAACATGGGGTGGTCCTAATTTTGAGTGAGAAACTTCATTCGGTAACATCACAATTTGATAAGCTAAGAGCCATTCGGTTTCAAGATATCATAAGCAAAGCAGTACCACGAAGAAAACCAAACCAAATAAATAAACCACGCTCTGCCAATACCTTTGCCTATAATGGTACAGAGCTGAGGGAACCTGATAATTTTGAGCATCAACCTGTCCGAGCCCAACAGCAACTGTTGGATGATGAAACTCGTGCACTTCAGGTTGAGTTGACTAGTCTTCTTGACGCAGTCCAGGAAACAGAAACTAAGATGGTAGAGATGTCTGCTTTAAATCACCTTATGTCTACACACGTTTTGCAGCAAGCACAACAAATTGAATTTCTTTATGAACAGGCTGTTGAAGCTACGAAGAACGTCGAGCTTGGTAATAAAGAACTTTCCCAAGCAATTCAGCGGAATAGCAGCAGCAGAACCTTCCTTCTTCTATTTCTCCAAAAGACTTACTACCCTTCTTCGAGCTATGCTTTCGCCATCAGACTTGTGGCAGATGCAACCGGCTTTTTGTTTTTTGATCAAAACCCACCTCCCAACATGAAGGGTACGAGTCGTTTCTTCACGATCGGCCTCGTTGCCTCCTGGTACTCCTCCAACATTGGGGTTCTCTTGCTCAACAAGTATTTGCTCAGCAACTATGGTTTCAAGTACCCCATCTTCCTCACCATGTGCCACATGACCGCTTGTTCTTTGTTCAGCTACCTTGCAATTGCTTGGTTCAAAGTCGTTCCTCTGCAAACACTTCGATCTCGCCTCCAATTCTTCAAGATCTCCGCCCTCAGCTTTATCTTCTGCATCTCCGTTGTCTTTGGCAACATTTCCCTTCGCTATCTTCCCGTCTCTTTCAACCAGGCTGTCGGAGCAACCACGCCCTTTTTCACCGCCGTTTTTGCCTATCTGATGACCTTGAAGAGGGAGGCTTGGCTCACTTATGTTACTCTCATTCCTGTCGTCACCGGAGTTATCATTGCCAGCGGGGGCGAACCCAGTTTCCATCTATTTGGGTTTCTAATATGTGTCGCAGCCACCGCTGCAAGAGCTCTCAAATCAGTTCTTCAAGGAATTTTGCTTTCTGCAGATGGAGAGAAGCTGAATTCTATGAATCTCCTTTTGTATATGGCCCCAATGGCTGTTGTGTTCTTGCTTCCTGCAACACTTGTTTTGGAAGATAATGTGATTGGTATCACACGAGCACTTGCTATAGATGATATCAAGATCATCTGGTACCTTCTTTTCAATTCGTCACTAGCATATTTCGTAAATCTTTCCAATTTTCTCGTCACAAAACACACCAGTGCGCTCACCCTTCAGGTACTAGGAAATGCCAAAGGGGCAGTGGCTGTCGTTGTCTCCATTTTAATCTTTAGAAACCCTGTGTCTGTTACTGGAATGTTGGGTTATACGATGACAGTAATGGGAGTCATCCTCTACAGTCAAGCAAAGAAACGAACAAATAAGATGGCTGCATTTGAAGCAAGATTTGTGGTAGGAAACTCCATCAACAGAGAGCTGCTCCACAGGGTACACAGTCTTCTCGCAGGCCTTGCACTTTTGTTGGGTGCCAATGAAAGACATAGCTAA 2739 44.61 MEILLFSLRICVKLKSFTTTVGQRRDVVKSPKLANPLFVGLSSWTSKSTEWSSVFSWRFGLRNVPKWMHSLPVDPRRHSDKQDHLRPLTIFAGLIFFATGYGALMAFLVLFIWAITRNRNAIFGAKPQSSDFQYERVSVVVAEGFKDYLRREMCRKVDSIPILFLSQTRNQRRPKPDFLTLYSFTLSFSPSSTSSSSLSPPPPPVSLSHPHVLVRQARVYADPGSLLLGFPRIVEKGMAKFRDRTEDFKDVVRHCAISLEYNESKLAAILASFIIQKPRQRSPFIKAALKTLESIGALEEFMLKHQKDYVDMYRTTDQERDNIEHEVTAFIKACQEQLDILKNNINEDDAHSKGWLGSRTDDSNADTIAHKHGVVLILSEKLHSVTSQFDKLRAIRFQDIISKAVPRRKPNQINKPRSANTFAYNGTELREPDNFEHQPVRAQQQLLDDETRALQVELTSLLDAVQETETKMVEMSALNHLMSTHVLQQAQQIEFLYEQAVEATKNVELGNKELSQAIQRNSSSRTFLLLFLQKTYYPSSSYAFAIRLVADATGFLFFDQNPPPNMKGTSRFFTIGLVASWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLFSYLAIAWFKVVPLQTLRSRLQFFKISALSFIFCISVVFGNISLRYLPVSFNQAVGATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVIIASGGEPSFHLFGFLICVAATAARALKSVLQGILLSADGEKLNSMNLLLYMAPMAVVFLLPATLVLEDNVIGITRALAIDDIKIIWYLLFNSSLAYFVNLSNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMLGYTMTVMGVILYSQAKKRTNKMAAFEARFVVGNSINRELLHRVHSLLAGLALLLGANERHS 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 551441 562020 + CmaCh15G001190.1 Cma15g00119 309269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00119 912 Coils Coil 331 351 - -
Cma15g00119 912 SUPERFAMILY t-snare proteins 298 510 IPR010989 GO:0016020|GO:0016192
Cma15g00119 912 Gene3D - 449 533 - -
Cma15g00119 912 PANTHER SOLUTE CARRIER FAMILY 35 565 870 - -
Cma15g00119 912 PANTHER - 565 870 - -
Cma15g00119 912 Pfam Triose-phosphate Transporter family 577 864 IPR004853 -
Cma15g00119 912 Pfam SNARE-complex protein Syntaxin-18 N-terminus 243 323 IPR019529 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02924 Cma15g00119 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02927 Cma-Chr4:19316375 Cma15g00119 Cma-Chr15:551441 7.13E-50 dispersed
Cma06g00741 Cma-Chr6:3744073 Cma15g00119 Cma-Chr15:551441 2.47E-131 dispersed
Cma14g00551 Cma-Chr14:2746734 Cma15g00119 Cma-Chr15:551441 1.29E-148 dispersed
Cma04g02924 Cma-Chr4:19310623 Cma15g00119 Cma-Chr15:551441 0 transposed
Cma15g00119 Cma-Chr15:551441 Cma03g00378 Cma-Chr3:4342576 3.00E-15 wgd
Cma15g00119 Cma-Chr15:551441 Cma04g02922 Cma-Chr4:19302380 0 wgd
Cma15g00119 Cma-Chr15:551441 Cma04g01143 Cma-Chr4:5871872 0 wgd
Cma15g00119 Cma-Chr15:551441 Cma04g00173 Cma-Chr4:844420 0 wgd
Cma15g00119 Cma-Chr15:551441 Cma07g01040 Cma-Chr7:5422768 1.25E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00119 - - csv:101206922 579.326