Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00125 ATGGCAACGACGGAGAGCACGGTCTTGCAATTTTCACAGTCTTCTAACACGTTATCTGCGAAGGTTCACCCTTTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCTGACCAGGCCGATCGAGTAATCGGTACACTTCTTGGCTCGATTTTACCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGCTGGATATTGACTATCATCACAATATGTTAAGTTCCCACCAAAAAGTTAATCCAAAGGAGGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACTGGTGGCAGTGCATTGATACACGAATTTTATTCTAGAGAAGTTGCAAACCCTATTCATCTGACCGTTGATACTGGATTTAACAATGGTGAAGGAACAATAAAAGCCTATATCTCTATCAATTTGTCCCTCGGAGATAGACAGCTTGCTGCTCAGTTTCAAGAAATTCCTTTAGATCTTCGAATGGTCGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTGCTTGCCTTAATCGACGATATTTACAAATATGTTGATAACGTTGTGGAAGGGCATGTTGAGGCAGACAACACGATAGGGAGATTTCTTGCTGACACTGTAGCCTCTCTTCCAAAACTGTCGCCAGCTGCTTTCGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTATCGAGTATCACCAGAACGCAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAAGTTCTGTAA 858 42.77 MATTESTVLQFSQSSNTLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSILPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLSSHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFNNGEGTIKAYISINLSLGDRQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEADNTIGRFLADTVASLPKLSPAAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQVL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 582434 585763 - CmaCh15G001250.1 Cma15g00125 309275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00125 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Cma15g00125 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 17 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma15g00125 285 Pfam Maintenance of mitochondrial structure and function 172 278 IPR024969 -
Cma15g00125 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma15g00125 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cma15g00125 285 SMART pad1_6 19 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma15g00125 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma15g00125 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 18 121 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cma15g00125 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 17 284 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02913 Cma15g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00125 Cma-Chr15:582434 Cma09g01047 Cma-Chr9:5438843 4.07E-11 dispersed
Cma14g00076 Cma-Chr14:359521 Cma15g00125 Cma-Chr15:582434 3.87E-33 wgd
Cma15g00125 Cma-Chr15:582434 Cma04g02913 Cma-Chr4:19275471 0 wgd
Cma15g00125 Cma-Chr15:582434 Cma06g00238 Cma-Chr6:1209242 5.46E-33 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00125 K03249 - csv:101205957 555.444