Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma15g00140 | ATGAGAGGTTGCCATGAGACTCGCTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAGAGAAGATGCACTCCCACTTGTATATTTGCGCCTTATTTTCGGTCTGATGAGCCTAAGAAGTTTGCTAAAGTTCATAAGGTTTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTGAGAGACCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTACAGACTAAAATGGTGGAGCTTCAACATGATCTTGCCATTGCCAAAGCTCGCCTTGCTCGTTATGCTGATTCTGATCATAATTATAACACCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGCCTTATGGTGGATTGAGCATCGCTGCAGGGCAGAGCTCTTCCGCAATCACCCAATATGGATATTTATGTGACTTCACCCACTTTCCTTATCCATTTAAAGCTTGA | 549 | 44.26 | MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDHNYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPFKA | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 668330 | 668878 | - | CmaCh15G001400.1 | Cma15g00140 | 309290 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma15g00140 | 182 | Coils | Coil | 91 | 111 | - | - | |
Cma15g00140 | 182 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 139 | - | - | |
Cma15g00140 | 182 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 21 | 1 | 139 | - | - | |
Cma15g00140 | 182 | ProSiteProfiles | LOB domain profile. | 11 | 112 | IPR004883 | - | |
Cma15g00140 | 182 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 109 | IPR004883 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g02894 | Cma15g00140 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g00140 | Cma-Chr15:668330 | Cma20g01123 | Cma-Chr20:8866401 | 6.72E-46 | dispersed | |
Cma15g00140 | Cma-Chr15:668330 | Cma04g02894 | Cma-Chr4:19177494 | 2.66E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36373 | PF03195 | LOB | 5.00E-39 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma15g00140 | - | - | cpep:111808214 | 348.206 |