Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00140 ATGAGAGGTTGCCATGAGACTCGCTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAGAGAAGATGCACTCCCACTTGTATATTTGCGCCTTATTTTCGGTCTGATGAGCCTAAGAAGTTTGCTAAAGTTCATAAGGTTTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTGAGAGACCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTACAGACTAAAATGGTGGAGCTTCAACATGATCTTGCCATTGCCAAAGCTCGCCTTGCTCGTTATGCTGATTCTGATCATAATTATAACACCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGCCTTATGGTGGATTGAGCATCGCTGCAGGGCAGAGCTCTTCCGCAATCACCCAATATGGATATTTATGTGACTTCACCCACTTTCCTTATCCATTTAAAGCTTGA 549 44.26 MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDHNYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPFKA 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 668330 668878 - CmaCh15G001400.1 Cma15g00140 309290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00140 182 Coils Coil 91 111 - -
Cma15g00140 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 139 - -
Cma15g00140 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 139 - -
Cma15g00140 182 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Cma15g00140 182 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02894 Cma15g00140 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00140 Cma-Chr15:668330 Cma20g01123 Cma-Chr20:8866401 6.72E-46 dispersed
Cma15g00140 Cma-Chr15:668330 Cma04g02894 Cma-Chr4:19177494 2.66E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36373 PF03195 LOB 5.00E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00140 - - cpep:111808214 348.206