Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00145 ATGACACCAGAGACGATCGAGAGGTTGTTGAAAGTTGTCAAGAAAATGGGTCTCAGTGATCAATATTCTGATGCAATTTCTTTACCTACCAATTCCATTAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACGCTCGCTAAGTGGAAAGCTTATAATGAATGTGCTGATTCCTGTAATGATGAAGACAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCACAATGCAAATATAGAGGTGTGAGGCAGAGGACATGGGGCAAATGGGTTGCAGAGATCCGTGAACCCAACAGAGGGAGTAGGCTATGGCTTGGTACCTTCCCGACAGCCATTGAAGCTGCTCTTGCCTACGACGAGGCTGCAAGGACGATGTACGGCGAGACTGCTCGTTTGAACCTTCCCAACATTAAAAACAGAGGGCAGCTACGGGGGATTCTTTTGGAGGATTACTTGGGGCTGCGGAACTCCGATTCTTCAACCGCTACTTCCACATGTTCTGGATCGACAATCACGACGTCGAACCAATCTGAGGTCTGTGTGCCTGAGGAGTTCGCACTGTGGCCACCCTCAGACATTAAGATTGAAGATGGAGAAGGCGAGTCGAGGACCTGGGATCACTCCGGTCATGCTCCGACTACGATGTGCTTAGAGAAGCCAGTGAAGCATGAAGATGTGGAAGCTAAATATCTCGAGCATCACAATAATCAAACAGTTCTACCGGATACTGAGTTACCTAGTTGGGATCATCTGCAGAATTTTCAAATGGACGTGATGTTTGAGCCGAGAATTGGCGATCAGGCCGATGACACTGCGAAGCCAATGAGCATGGAGAAGAAGCAAGTGAAAAATGAAGATAACGATGCTAAACATCTTGATCAGAGAAATGATCAGACAGTCTCATCAGGGACCGAGATTCCTGGTGTGGATGACTTGCAAAACTTCCAAATGGATGAAATGTTCGATGTGGACGAGCTTCTAGGCCTGATAAATAGTGATTGCTTGTATGATCCAAGCATCTTGCAGGGCAATGTAGATGGTTTTAACAGCACAGCACCTTCCCAAGTCAGCGATCACGGGTCTGAGAAGGCATCAAGTTTGTCATATCAGTTCCAGAACCCCGACGCGAAGCTGCTCGGAAGCCTCCAACACATGGAGCAATCTCCGGCGAATGTCGACTGCAGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATGTGAATGCTGCAGCAGATGAGTACATAAGATACCTGAATTATGAGATGGATGATATGGGATTTTGA 1338 47.31 MTPETIERLLKVVKKMGLSDQYSDAISLPTNSIRKRKSRSRRDRSTVAETLAKWKAYNECADSCNDEDKPIRKAPAKGSKKGCMKGKGGPLNSQCKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGETARLNLPNIKNRGQLRGILLEDYLGLRNSDSSTATSTCSGSTITTSNQSEVCVPEEFALWPPSDIKIEDGEGESRTWDHSGHAPTTMCLEKPVKHEDVEAKYLEHHNNQTVLPDTELPSWDHLQNFQMDVMFEPRIGDQADDTAKPMSMEKKQVKNEDNDAKHLDQRNDQTVSSGTEIPGVDDLQNFQMDEMFDVDELLGLINSDCLYDPSILQGNVDGFNSTAPSQVSDHGSEKASSLSYQFQNPDAKLLGSLQHMEQSPANVDCRFDFLKQGREEDVNAAADEYIRYLNYEMDDMGF 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 681336 683192 - CmaCh15G001450.1 Cma15g00145 309295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00145 445 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Cma15g00145 445 MobiDBLite consensus disorder prediction 284 313 - -
Cma15g00145 445 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Cma15g00145 445 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Cma15g00145 445 SUPERFAMILY DNA-binding domain 96 153 IPR016177 GO:0003677
Cma15g00145 445 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 31 346 - -
Cma15g00145 445 MobiDBLite consensus disorder prediction 284 328 - -
Cma15g00145 445 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
Cma15g00145 445 CDD AP2 95 154 IPR001471 GO:0003700|GO:0006355
Cma15g00145 445 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Cma15g00145 445 Gene3D AP2/ERF domain 95 154 IPR036955 GO:0003700|GO:0006355
Cma15g00145 445 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 31 346 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00128 Cma15g00145 CCT
Cma04g02891 Cma15g00145 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00145 Cma-Chr15:681336 Cma20g00645 Cma-Chr20:2991403 1.86E-47 dispersed
Cma15g00145 Cma-Chr15:681336 Cma03g00323 Cma-Chr3:4040777 2.51E-41 wgd
Cma15g00145 Cma-Chr15:681336 Cma04g02891 Cma-Chr4:19169439 6.01E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36374 PF00847 AP2 2.90E-15 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00145 - K09286 cpep:111808198 808.135