Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00157 ATGTCAAGAGAAAGAGAATTGCAGGAGGTCGATGAGATAAAGAGGGAGGTGGTTGAAGGGTTTTATCCATTAATGGGAAGAAGGCAGATACTGAGTCAAGCTGGGGCGCTGAATACCATAACGCCATGTGCGGCCTGTAAGCTATTAAGAAGAAGGTGCGCTCAAGAATGCCCATTTTCTCCATATTTCTCTCCGCATGAACCCCACAAGTTTGCTTCGGTCCATAAGGTTTTTGGTGCCAGCAACGTGGCTAAGATGCTCATGGAAGTGCCGGAGAGTCAAAGAGCGGACGCCGCAAACAGCCTGGTGTATGAAGCCAATCTGAGGCTGAGGGATCCAGTGTACGGCTGCATGGGCGCCATTTCTGCTCTCCAACACCAACTTCAAACCTTACAAGCTGACCTCAACGCTATAAGAACTGAGATTTTGAAGTACAAATATAGAGAAGCCATCATCCCTTCTCCTTCCTCCTCTTCTTCTTCCCACATCGCTTTCATTTCCGCTACCGGGCTCGTATCTACCACCGCAACCCCACCCACTGCCCCGCCAACTCCGCCGCCTTCTCAGCCACCTCCGCTCTCTCTTCCCCCGCCTCTTCCTCCGTCCTCCTCCTCCTCCATCTTTTCTCCGCCCATCAGCACCACCACTGCCCCTCAACTAATTAACCCCATCTCAACCCAACATATTCCTTACTTTGGTTAA 702 51.14 MSRERELQEVDEIKREVVEGFYPLMGRRQILSQAGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQADLNAIRTEILKYKYREAIIPSPSSSSSSHIAFISATGLVSTTATPPTAPPTPPPSQPPPLSLPPPLPPSSSSSIFSPPISTTTAPQLINPISTQHIPYFG 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 729704 731766 - CmaCh15G001570.1 Cma15g00157 309307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00157 233 MobiDBLite consensus disorder prediction 178 205 - -
Cma15g00157 233 MobiDBLite consensus disorder prediction 206 220 - -
Cma15g00157 233 PANTHER BNAA03G19070D PROTEIN 26 233 - -
Cma15g00157 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 233 - -
Cma15g00157 233 MobiDBLite consensus disorder prediction 174 220 - -
Cma15g00157 233 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Cma15g00157 233 Pfam Lateral organ boundaries (LOB) domain 42 138 IPR004883 -
Cma15g00157 233 Coils Coil 121 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00113 Cma15g00157 CCT
Cma04g01074 Cma15g00157 CCT
Cma04g00113 Cma15g00157 ECH
Cma04g01074 Cma15g00157 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00113 Cma-Chr4:551388 Cma15g00157 Cma-Chr15:729704 1.02E-66 dispersed
Cma15g00157 Cma-Chr15:729704 Cma20g01123 Cma-Chr20:8866401 8.76E-47 dispersed
Cma15g00157 Cma-Chr15:729704 Cma04g01074 Cma-Chr4:5545442 6.15E-79 wgd
Cma15g00157 Cma-Chr15:729704 Cma04g00134 Cma-Chr4:631586 1.81E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36376 PF03195 LOB 2.00E-40 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00157 - - mcha:111006433 248.054