Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00170 ATGAGAAGGCTACTGGGGCTGTTCGTCTTGTTCGTTGTGGCTCCGGTGTTGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGCCTGATTGTGTTCAAGGCTGACATTGAAGACCCTAAAGGGAAACTCGCGTCGTGGAATGAAGATGACGATAACCCCTGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTGGAGCTCGATCTTGATGGCTTCTCTCTCAATGGCAGGCTTGGCCGTGGTCTTCTTCAGCTGCAGTTTCTTCGTAAACTCTCTCTTTCGAACAACAATCTTACTGGAAATTTGAGTCCCAATAATGCTCGCTTTGAAAATCTGCGAGTGGTCGATTTAAGCGGCAACGGTTTTCATGGGATGATTCCGGACGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAACTTTCAGGGAAAATCCCCGAAAGTTTGGGCTCTTGCGTCAGTCTTGCTGCTGTTAATTTATCTTATAATCAGTTTTCTGGTTCATTACCTTCTGGGATTTGGTCCTTGACTGGGCTTCGGTCCTTGGATTTATCTGGTAATGTTTTGGAAGGTGAAATTCCACTGGAGGTGAAAGGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGACATTCCGGCGACAATGCAGCGGCTTAGTTTGTGCAGTACTCTTAATTTAAGAAGAAACCTATTTGAAGGGAAGGTTCCTGAATGGATTGGTGAAATGGAAGGCCTTGAAATCTTGGATCTTTCAGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTCAGGAATCTTCAAAATCTGAAGGTTTTGAATCTTTCTGAGAATGGTTTAATTGGCAGCTTGGCAGGGTCCGTACTTCCTTCTCAAAACCTTTCAGCCATGGATCTCGGCCATGGCTCTCTCACTGGTGTGCTTCCGGCCTGGATTCTGAAGCTGGGTTCTCAAAATGTATTGCCTTCTGATGTCAAAAGAAGCTCTCTTTCTACACCTGTGGGAAAAGCTCTTGTTAATCTTCAAGTGTTGGATTTGTCTCACAATGCACTTTCTGGTGAAATTTCACCTGAGATTGGGATATTAAGTAACTTGCAGGTGTTGAACCTGTGTAAGAACTCATTTGCTGGGGCTATTCCAGAGAGTGTTGGAGGCATGAAGGGCTTGGTTTTTCTTGACTTGAGTGAGAACCAGCTGAATGGAAGCATTCCCGGAACGCTCGGCGGAGAGGAATCGTTGAAAGAATTGAGACTGGAGAAGAATTTTCTGGAAGGTGAAGTTCCAAATTCGATTGGGAACTGTTCTTCACTTGTAACTTTGGACATATCGGAAAACAGGTTAAGTGGCTCCATACCAGCAGCATTGTCTCAACTGACCAATCTTCAAGTTGTGGACTTATCAGCAAACAATCTCAGTGGTGCACTGCCAAAACAGTTAGCCAATCTTCCCAACCTTATTTTATTCAACATTTCTCACAACAATCTGCAAGGAGAACTGCCGGCAGGTGGCTTTTTCAATACAATTTCCCCTTCCTCTGTGGCTGGAAATCCTTCTCTTTGTGGTTCTATTGTCAAAAAGTCTTGCCCTGGTGTCCTTCCAAAGCCTATTGTTCTAAACCCCAACTCATCTTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATTCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTTGTCGGTGTAGTTGCAATCACCGTCCTTAACTTCCATGTTCGGTCTTCTGCAAATCGTCCTGAAGCAGCCATCACGTTTTCTGGGGGAGATGACTTCAGCAACTCTCCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGAGATCCTGACTTCAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGAGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCACCCGGTTGCAATAAAAAAGCTCACAGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAATTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTTTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTCCTCATATACGAATTTGTTTCTGGAGGGAGTTTATATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTTTCATGGAATGAAAGATTTAACATAATCCTCAAAACCGCGAAAAGCTTGGCTCATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTTCTGATTGATGGTTCAGGCGAGCCTAAAGTTGGAGATTTCGGCCTAGCAAGGTTGTTGCCAATGCTTGATCGATACGTGTTGAGCAGTAAGATACAGAGTGCACTTGGCTATATGGCACCTGAATTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTGGTTCTTGAGGTGGTAACGGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGAGCGCTGGAAGAAGGTGGGGTGGAGGAATGCATTGATGGGAGGCTCCAGAGAAATTTCCCATCTGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACCTCACAGGTGCCATCAAACCGACCTGATATGACAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 44.77 MRRLLGLFVLFVVAPVLVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDNPCNWVGVKCNPRSNRVVELDLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLAKNKLSGKIPESLGSCVSLAAVNLSYNQFSGSLPSGIWSLTGLRSLDLSGNVLEGEIPLEVKGMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDIPATMQRLSLCSTLNLRRNLFEGKVPEWIGEMEGLEILDLSGNRFSGPVPSSFRNLQNLKVLNLSENGLIGSLAGSVLPSQNLSAMDLGHGSLTGVLPAWILKLGSQNVLPSDVKRSSLSTPVGKALVNLQVLDLSHNALSGEISPEIGILSNLQVLNLCKNSFAGAIPESVGGMKGLVFLDLSENQLNGSIPGTLGGEESLKELRLEKNFLEGEVPNSIGNCSSLVTLDISENRLSGSIPAALSQLTNLQVVDLSANNLSGALPKQLANLPNLILFNISHNNLQGELPAGGFFNTISPSSVAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVLNFHVRSSANRPEAAITFSGGDDFSNSPTTDANSGKLVMFSGDPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILKTAKSLAHLHQMNIIHYNIKSSNVLIDGSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGGVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMTEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 777070 780799 - CmaCh15G001700.1 Cma15g00170 309320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00170 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Cma15g00170 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 3 955 - -
Cma15g00170 964 Pfam Protein kinase domain 684 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00170 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Cma15g00170 964 SMART LRR_sd22_2 285 311 - -
Cma15g00170 964 SMART LRR_sd22_2 92 121 - -
Cma15g00170 964 SMART LRR_sd22_2 500 526 - -
Cma15g00170 964 SMART LRR_sd22_2 380 409 - -
Cma15g00170 964 SMART LRR_sd22_2 189 210 - -
Cma15g00170 964 ProSiteProfiles Leucine-rich repeat profile. 382 404 IPR001611 GO:0005515
Cma15g00170 964 Gene3D Ribonuclease Inhibitor 87 304 IPR032675 -
Cma15g00170 964 Pfam Leucine rich repeat 405 463 IPR001611 GO:0005515
Cma15g00170 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515
Cma15g00170 964 Pfam Leucine rich repeat 478 537 IPR001611 GO:0005515
Cma15g00170 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Cma15g00170 964 CDD STKc_IRAK 687 953 - -
Cma15g00170 964 SUPERFAMILY L domain-like 43 358 - -
Cma15g00170 964 Gene3D Ribonuclease Inhibitor 305 574 IPR032675 -
Cma15g00170 964 Gene3D Ribonuclease Inhibitor 25 86 IPR032675 -
Cma15g00170 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 955 - -
Cma15g00170 964 SUPERFAMILY L domain-like 379 563 - -
Cma15g00170 964 Gene3D Phosphorylase Kinase; domain 1 675 757 - -
Cma15g00170 964 SMART LRR_typ_2 380 404 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 116 140 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 189 212 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 524 548 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 428 451 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 213 237 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 285 308 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 500 523 IPR003591 -
Cma15g00170 964 SMART LRR_typ_2 309 333 IPR003591 -
Cma15g00170 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cma15g00170 964 PRINTS Leucine-rich repeat signature 431 444 - -
Cma15g00170 964 PRINTS Leucine-rich repeat signature 500 513 - -
Cma15g00170 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00170 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00102 Cma15g00170 CCT
Cma04g01061 Cma15g00170 CCT
Cma04g01061 Cma15g00170 ECH
Cma04g00102 Cma15g00170 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00010 Cma-Chr14:56848 Cma15g00170 Cma-Chr15:777070 2.51E-17 dispersed
Cma14g00011 Cma-Chr14:58262 Cma15g00170 Cma-Chr15:777070 3.47E-127 dispersed
Cma14g00012 Cma-Chr14:59412 Cma15g00170 Cma-Chr15:777070 1.01E-28 dispersed
Cma14g01481 Cma-Chr14:11254750 Cma15g00170 Cma-Chr15:777070 0 dispersed
Cma15g00170 Cma-Chr15:777070 Cma03g00702 Cma-Chr3:5732636 1.58E-06 dispersed
Cma06g00738 Cma-Chr6:3728629 Cma15g00170 Cma-Chr15:777070 7.41E-176 transposed
Cma15g00170 Cma-Chr15:777070 Cma04g01061 Cma-Chr4:5479046 0 wgd
Cma15g00170 Cma-Chr15:777070 Cma04g00102 Cma-Chr4:508360 0 wgd
Cma15g00170 Cma-Chr15:777070 Cma06g00186 Cma-Chr6:954289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69126 PF00069 Pkinase 4.30E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00170 - - csv:101217024 1697.95