Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma15g00193 | ATGGCGGTTCCCGCTGTTCAGTTCCCGATTTTCATGGCTGTCAGAGTGCTCGGGATGGTTGTGGCAGCTCTTGTGTTCATTTGGACCTTGCATTTCCGTGGTGGTTTGGCACTTAGCTCAGACAACAAGGATCTCATCTTCAATGTTCATCCTGTTCTTATGGTGATTGGACTTATTCTTCTAAATGGTGAAGCAATGTTAGCATACAAGACAGTTTCAGGAACCAAAAACTTCAAGAAACTAGTTCATCTTGCACTCCAGTTTGTTGCATTGTTTTTAAGCCTGATTGGCATATGGGCTGCCTTGAAGTTCCACAATGACAAGGGAATCGACAACTTTTACAGTCTACATTCATGGTTGGGCTTAGTTTCTGTCTTTTTGTTTGGCATCCAGTGGGGTGCAGGATTTGTAACCTTTTGGTACCCAGGTGGCTCCAGAAACAGCAGAGCTACTCTGTTGCCATGGCATGTTTTCTTTGGCGTTTACATATATGGCCTTTGCATTGCTACAACTGTTACTGGATTGTTGGAAAAAGCTACCTTCCTTCAAACCAGTAAGGTAATATTACGCTATTCTAATGAGGCTTTGCTGATAAATTCATTGGGTATCGTCGTTGTTGTATTGGGTGGCCTCATAATTCTTGCGGTTATCGCTCGGTCGAACAACAAAGGTGACGTCTACAGAGGGCCAGCAGAGTAG | 699 | 43.92 | MAVPAVQFPIFMAVRVLGMVVAALVFIWTLHFRGGLALSSDNKDLIFNVHPVLMVIGLILLNGEAMLAYKTVSGTKNFKKLVHLALQFVALFLSLIGIWAALKFHNDKGIDNFYSLHSWLGLVSVFLFGIQWGAGFVTFWYPGGSRNSRATLLPWHVFFGVYIYGLCIATTVTGLLEKATFLQTSKVILRYSNEALLINSLGIVVVVLGGLIILAVIARSNNKGDVYRGPAE | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 931475 | 933835 | - | CmaCh15G001930.1 | Cma15g00193 | 309343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma15g00193 | 232 | PANTHER | CYTOCHROME B561-RELATED | 1 | 228 | IPR043205 | GO:0016491 | |
| Cma15g00193 | 232 | CDD | Cyt_b561_ACYB-1_like | 40 | 183 | - | - | |
| Cma15g00193 | 232 | Pfam | Eukaryotic cytochrome b561 | 49 | 181 | IPR006593 | - | |
| Cma15g00193 | 232 | PANTHER | B561, PUTATIVE-RELATED | 1 | 228 | - | - | |
| Cma15g00193 | 232 | Gene3D | - | 2 | 229 | - | - | |
| Cma15g00193 | 232 | ProSiteProfiles | Cytochrome b561 domain profile. | 13 | 217 | IPR006593 | - | |
| Cma15g00193 | 232 | SMART | 561_7 | 49 | 175 | IPR006593 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g02842 | Cma15g00193 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma19g00416 | Cma-Chr19:5015093 | Cma15g00193 | Cma-Chr15:931475 | 1.26E-70 | transposed | |
| Cma15g00193 | Cma-Chr15:931475 | Cma18g01050 | Cma-Chr18:8736623 | 5.16E-55 | wgd | |
| Cma15g00193 | Cma-Chr15:931475 | Cma04g02842 | Cma-Chr4:18985478 | 2.47E-139 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma15g00193 | K08360 | - | csv:101212633 | 414.075 |