Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00197 ATGGCAGAAGAACGAGAGGATCCACAGAGGCTGAAGAGGGCAGCGGCGGCAGCATACGATTACGAGAACGATCCCAAATGGGCTGATTACTGGTCCAACATTCTGATCCCTCCTCACATGGCTTCTCGCCCCGACGTTGTTGACCATTACAAGCGCAAGTTCTACCAGCGTTACATCGATCCCGATCTTGTGGTAGAGGCCATGTCTTCAAGTAGTTCAACTCAGTCATCCAGACCTTCAGCAACATCTTCAGCAGCACCCCCTCCTACTAATGACCGTAGTCGACCACGAAGTTCAGGGTCAACGACTAGGACTTCAGGTACGTCTGCAAGTGCAGATGCTAATCCAAGTCCGTTGCGCTGGGATCGACAAACGATCCAGTTTTCTGTCAATGCATGGGTGCTTATTGTAGCTGTGCTTGCAATTTTCCCCCTAATACCCAAAAATCTTTCGCAGAGGGCATATAGGCTATCTTTTATGGGCATAACTTGTTCTTCTTTATATTCTTTGTACTCGTTATACGGAAAGCCCAGGGCGTGGAATTTGCAAGCATTGCAAACCTATTTCCAGTCCATAATTGCAACAAAAGATTTCATTTACTTCATTTACTGTATCACCTTTTTGACTTCAAATATTTGTCTTAAATTTGCTTTAATTCCTATCCTGTGTCGGGCTCTTGAACATGTTGCAAAGTTTCTTAGGCGTAATTTTGCACGTTCGTCCTTATACAGGAAATATTTGGAAGAGCCTTGCGTATGGGTGGAGTCAAATTCAACTACTCTCAGCATCCTATCTTCGCAGGCTGAGATTGGACTTGGCTTCCTCCTAATCATCTCCTTGCTTTCGTGGCAACGCAACTTCTTACATGCATTCATGTACTGGCAGCTGCTAAAGCTCATGTATCACGCTCCTGCCACTTCTGGGTATCATCGTAGCGCCTGGTCGAATATTGGGAGGTTTGTTTCTCCGTTGATCTACCGCTATGCCCCGTTCCTCAATACTCCTCTTTCAATGGCGCAGCGATGGTGGTTCAGGTAG 1038 46.24 MAEEREDPQRLKRAAAAAYDYENDPKWADYWSNILIPPHMASRPDVVDHYKRKFYQRYIDPDLVVEAMSSSSSTQSSRPSATSSAAPPPTNDRSRPRSSGSTTRTSGTSASADANPSPLRWDRQTIQFSVNAWVLIVAVLAIFPLIPKNLSQRAYRLSFMGITCSSLYSLYSLYGKPRAWNLQALQTYFQSIIATKDFIYFIYCITFLTSNICLKFALIPILCRALEHVAKFLRRNFARSSLYRKYLEEPCVWVESNSTTLSILSSQAEIGLGFLLIISLLSWQRNFLHAFMYWQLLKLMYHAPATSGYHRSAWSNIGRFVSPLIYRYAPFLNTPLSMAQRWWFR 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 957473 962247 - CmaCh15G001970.1 Cma15g00197 309347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00197 345 MobiDBLite consensus disorder prediction 69 117 - -
Cma15g00197 345 PANTHER OS01G0604700 PROTEIN 6 345 - -
Cma15g00197 345 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 6 345 - -
Cma15g00197 345 Pfam Transmembrane protein 33/Nucleoporin POM33 124 315 IPR005344 GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00392 Cma15g00197 CCT
Cma04g02840 Cma15g00197 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00392 Cma-Chr1:1973492 Cma15g00197 Cma-Chr15:957473 1.63E-146 dispersed
Cma15g00197 Cma-Chr15:957473 Cma04g02840 Cma-Chr4:18970672 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00197 K20724 - csv:101211899 599.742