Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00221 ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTCAATCCAAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACAGATAACTGTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGGTATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAGCCTTTAAGAGGTGATGTGGATACAGATTCAGATTCTTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGATGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTTATGGCGTTCGATGAAACGACTTGA 684 42.84 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGATPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRGDVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1097974 1100788 + CmaCh15G002210.1 Cma15g00221 309371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00221 227 MobiDBLite consensus disorder prediction 103 133 - -
Cma15g00221 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Cma15g00221 227 MobiDBLite consensus disorder prediction 103 123 - -
Cma15g00221 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Cma15g00221 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Cma15g00221 227 SUPERFAMILY RING/U-box 171 223 - -
Cma15g00221 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Cma15g00221 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Cma15g00221 227 SMART ring_2 177 217 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02813 Cma15g00221 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01438 Cma-Chr2:8277306 Cma15g00221 Cma-Chr15:1097974 3.25E-29 dispersed
Cma15g00221 Cma-Chr15:1097974 Cma15g01239 Cma-Chr15:7852624 3.28E-26 dispersed
Cma15g00221 Cma-Chr15:1097974 Cma04g02813 Cma-Chr4:18830632 1.37E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00221 - - csv:101207736 446.817