Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00225 ATGGATGCGAATAGTTCGCGATTTCAGTCGTTTGGTCAGACTGAGATTAACTGGGACAAGCTTGATAAAGCAAAATTTTATGGCATCGGAGCTGGGCTCTTTACTGGGATTACAGTTGCACTGTACCCTGTTTCCGTTGTAAAAACAAGGATGCAGGTTGCTGTAAAGGATTCTGCAGAGAAAAACGCGGTGTCTGTCGTTAAAGGCTTACTTAAGAGTGATGGGGTTCCTGGTCTTTACAGAGGGTTTGGCACAGTAATCACTGGTGCAATTCCTGCAAGGATTATCTTTCTTACCGCTTTGGAGACGACCAAAGTGGGAGCCTTTAAAATGGTTGAGCCATTTAAATTTTCTGAACCCTCACAGGCTGCTATAGCAAATGGGTTAGCTGGAATGACTGCATCTCTTTTCTCTCAAGCTGTTTTCGTTCCAATTGATGTGATTAGTCAAAAGCTAATGGTTCAAGGATACTCGGGCAACACAAGATATAACGGGGGCTTAGATGTTGCTCGTAAATTGGTAAAGTCCGATGGGATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATAACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCATCATCTGGAGGTTCTTAGGCCAAAACTCAGCTTCGGAGAGCTTTGCTCCTAGCCATTCCCAACTTATTTCAGTGCAAGCTGGGGGTGGAATAATTGCAGGAGCAACAGCTTCCTTCATTACAACACCATTGGACACCATAAAGACTCGCTTACAGGTGATGGGCGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTAATCGCTGAGGATGGATGGAAAGGTTTCTACAGGGGGCTGGGTCCTCGGTTCTTCAGCATGTCAGCCTGGGGAACCTCCATGATATTGGCTTACGAGTACTTGAAGCGCCTGTGTGCAAATGATGAACAGAGTTGA 966 45.13 MDANSSRFQSFGQTEINWDKLDKAKFYGIGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNAVSVVKGLLKSDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAFKMVEPFKFSEPSQAAIANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYNGGLDVARKLVKSDGIRGLYKGFGLSVITYSPSSAVWWASYGASQRIIWRFLGQNSASESFAPSHSQLISVQAGGGIIAGATASFITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKRLCANDEQS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1120065 1123084 + CmaCh15G002250.1 Cma15g00225 309375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00225 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 318 - -
Cma15g00225 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
Cma15g00225 321 SUPERFAMILY Mitochondrial carrier 19 311 IPR023395 -
Cma15g00225 321 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085
Cma15g00225 321 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Cma15g00225 321 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Cma15g00225 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 318 - -
Cma15g00225 321 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Cma15g00225 321 Pfam Mitochondrial carrier protein 238 317 IPR018108 -
Cma15g00225 321 Pfam Mitochondrial carrier protein 30 106 IPR018108 -
Cma15g00225 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 314 IPR018108 -
Cma15g00225 321 Gene3D Mitochondrial carrier domain 37 321 IPR023395 -
Cma15g00225 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02808 Cma15g00225 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00357 Cma-Chr9:1469887 Cma15g00225 Cma-Chr15:1120065 2.54E-87 dispersed
Cma15g00225 Cma-Chr15:1120065 Cma17g00701 Cma-Chr17:5800205 3.53E-83 dispersed
Cma14g01569 Cma-Chr14:11759598 Cma15g00225 Cma-Chr15:1120065 8.86E-110 transposed
Cma15g00239 Cma-Chr15:1166966 Cma15g00225 Cma-Chr15:1120065 4.15E-09 transposed
Cma15g00225 Cma-Chr15:1120065 Cma04g02808 Cma-Chr4:18795033 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00225 K15121 - csv:101206140 597.045