Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00239 ATGCTAATGGTTCAAGGATACTCGGGCAACACAAGATATAACGGGGGCTTAGATGTTGCTCGTAAATTGGTAAAGTCCGATGGGATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATAACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCATCACCTGGAGGTTCTTAGGCCAAAACTCAGCTTCGGAGAGCTTTGCTCCTAGCCATACCCAACTTATTTCAGTGCAAGCTGGGGGTGGAATAATTGCAGGAGCAACAGCTTCCTTCATTACAACACCATTGGACACCATAAAGACTCGCTTACAGGTGATGGGCGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTAATCGCTGAGGATGGATGGAAAGGTTTCTACAGGGGGCTGGGTCCTCGGTTCTTCAGCATGTCAGCCTGGGGAACCTCCATGATATTGGCTTACGAGTACTTGAAGCGCCTGTGTGCAAATGATGAACAGAGTTGA 516 46.9 MLMVQGYSGNTRYNGGLDVARKLVKSDGIRGLYKGFGLSVITYSPSSAVWWASYGASQRITWRFLGQNSASESFAPSHTQLISVQAGGGIIAGATASFITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKRLCANDEQS 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1166966 1168269 - CmaCh15G002390.1 Cma15g00239 309389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00239 171 ProSiteProfiles Solute carrier (Solcar) repeat profile. 80 164 IPR018108 -
Cma15g00239 171 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 2 168 - -
Cma15g00239 171 SUPERFAMILY Mitochondrial carrier 2 161 IPR023395 -
Cma15g00239 171 Gene3D Mitochondrial carrier domain 1 171 IPR023395 -
Cma15g00239 171 Pfam Mitochondrial carrier protein 88 167 IPR018108 -
Cma15g00239 171 Pfam Mitochondrial carrier protein 2 60 IPR018108 -
Cma15g00239 171 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 60 IPR018108 -
Cma15g00239 171 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 2 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02808 Cma-Chr4:18795033 Cma15g00239 Cma-Chr15:1166966 2.59E-07 dispersed
Cma15g00239 Cma-Chr15:1166966 Cma17g00701 Cma-Chr17:5800205 4.31E-48 dispersed
Cma15g00239 Cma-Chr15:1166966 Cma15g00225 Cma-Chr15:1120065 4.15E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00239 K15121 - csv:101206140 317.39