Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00248 ATGGCTAAGAACAAGGACGACCACTCTGCCAGACCTCCACCCCGCCCGACTATCACTCTGCCACCACGTCCTTCCATGGAGGCCTTTTTTGCTGGTGGACCCACTGGACTTAGCCCTGGCCCTATGACTCTCGTCTCCAGTTTCTTCGCCGACGCTGCCGTTGACTCGCCGTCTTTCTCCCAGCTTCTCGCCGGAGCCATGGCCTCTCCGATAGCTATGGGGTTTCTGGGAACTGGGTCCACGCCCAATTCGGAATCGGAATTTGGGTTGAAGCAATCGAAACCGATGAATTTAGTAGTGCCTCGGTCTCCTTTGTTCTCGGTCCCGCCAGGGCTTAGCCCTTCTGGGTTGCTTAATTCTCCGGGGTTTTATCCTCCCCAGAGTCCGTTCGGGATGTCGCACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGGCGAACTCTCATATGCATATGCAACAAGCTGAATATCAACATTCCTCAATACCAGCTTCTACCGAACCGTTGATACGCGATCCATCGTTTACTCTTGATGAAGCATCTCTGCAGTTAATATTACCCTCCACGTCCGATACGAAAAGTCACGTTCTAGAATCGACAGAAGTCTCTCATCCTGATAGAAAATATCAACCTCCTCCTCCACATGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATACGGACAGAAGTTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAGAAGAAGATCGAACGCTCACCTGATGGACAAATTACTGAAATTATTTACAAAGGCCAGCACAACCATGAACGTCCTCCAGCCAACAAACGCGCTCGAGATAATAGCGAACCGACTGGATGTACAAATTCTTCGACGAAGCTTGAATGTGGTTTGCAAAATCAAGCGGGAATTTTGAACAAGTCGAGTGAAAATGTGCAAGTAGGGTCTAGTGACAGTGAAGAACAAGGTGATACAGAGATAACGGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGAAGCTGGGACATCTGGTGCTGCCTTGTCTCATAAGACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGATGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAATCCGAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTCGAGAGGTCTTCAACGGACTCGAAAGCTGTCGTAACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACAGTCAACAATACCGTGCACCAGATCAAACCACATAAAGTTGTAGCTCAGAAACATCCATTACTCAAAGAATTGGAATTTGGAACAAAAGAGCTCCATTTGCCTAATGTTCCTCTAATCCTGATGCCAAAGGAGATGCAGGGAGTCCAGAGGAGGAACACAGGGTCATTGGAGTGCCAACAACTTAACCCAAAAATGGCTCTCAATTCTTATGGGGGTCGGGTCCATTTCCCCTCCCTCCCTTGCTCAGCCCATTTCCCGATCAGGGTCGATCGCCTTTGTGTCGCCTCTCTGATCGATGCTGTCGGGATTTGGAGGTTCATGGGTTGCATTAGCTCCAAGCAGGTAGCTAAGGCGGCGGCGTCTCCCGTTTACAACCACCGCTCCACCACAACCGCCACAGCCACAGCCACAGCCAAGAATGGCTCTGCTGCGACCATGGATCGTTCGTCCAAAACTCATTCCGTGACGACGCTCGAACATGAGAAGAAAGGGGAGGAGAAACCGGAGGATCGAGGTCGAGACCTCAAAAAATCCAAGAAAGGGAGTTCCCAAGGGGAGAAGGGTACTCTCAGATCAGGGCCATCTCAACGCTACGTCGAAGCAGAGCAGGTTGCCGCCGGCTGGCCCTCCTGGCTCAGTAGTGCCGCCGGCGAGGCCATTCAGGGATGGGTGCCTCTCCGAGCTGATTCCTTCGAGAAGTTGGAAAAGATTGGACAAGGTACATACAGCAGCGTGTTCCGAGCTCGAGAAGTTGAGACAGGAAGGATGGTTGCGTTGAAGAAGGTTCGTTTCGACAATTTTCAACCGGAGAGCATTAGGTTCATGGCACGAGAAATTATGATTTTGCGCAGGCTTGATCACCCAAACATCATGCAATTAGAAGGCCTGATTACTTCCAAAATGTCTAGCAGCATTTACCTTGTATTCGAATACATGGAACATGATCTTGCAGGGTTAGTGTCTTGTCCCGATATCGAGTTCAGTGAGGCACAGGTAAAGTGTTACATGAGACAACTTCTATCTGCAATTGAGCATTGCCACCTTCGGGGTATAATGCATAGGGACATTAAAGCATCCAATATTTTGGTAAACAATGAAGGAATTCTAAAGTTGGCAGATTTTGGACTGGCAAATATCATTAGCTCTAGAAACAAGCAATCACTAACAAGTCGAGTGGTGACATTATGGTATCGACCTCCCGAGCTTCTGATGGGTTCGACAAATTATGGATTAACGGTGGACCTTTGGAGCATAGGATGTGTATTTGCAGAATTGCACCTGGGGAAACCCCTTCTTAAAGGAAGAACAGAGGTTGAACAATTGCACAAAATATTCAAACTTTGCGGCTCCCCACCTGAAGAGTTCTGGAAAAAAACAAAGCTCCCTCATGCAGCTATGTTTAGACCCCAGCATCCATATGAAAGTTCCCTTAACGAAAAGTGCAAAGATTTTGCACCATCCGCAGTGAGCCTCTTAGAAACTCTTCTTGCCATCGAACCTCCTAAGCGGGGTACTGCCTCATCAGCTCTCATGTCTGAGTATTTCAAAACGAAGCCATACGCTTGCGATCCATCGACATTGCCCAAGTATCCTCCAAACAAAGAAATGGATGCCAAAAATCGTGAAGATGCGCTAAGGATGCGAGCTAATGCAAAAGCAAAAGAAACAGGGGCAACACAAAGGCCTAAAAAAGTCCGAAGAAATGTCCCAGAATTCAACAGCCATAAAGTACCAATAAAAGAGGAAGCAGAAGAAAACAGTCAACCTTCTCGACGGAACAATGGCAGTAATTCTGCCAATCTTTCCAATGAACAAGGCGACGTTTTCCAGAGAGAGCCTCAGAAGCCACTATATGATGCAACATCAATGACTTCCCAGGCCGCGACTGCACCTCAAAGAGGAGATAGCGCATTCACAGCCCCAATACCCGTCTCATCATCTAGTGGCTTTGCTTGGGTAAAGAAGCGAAAAGAGGAAGCTACGTCTACAATATCGGATGGTCTTAAGAGCCAAATAAGTGCTCTGGATCCATCGTTTGCAAATTTTACCTTAGAATCAACAAAAAAACAGATTGGCCATGCGGACATTCCAGCCAATTCAAGCGCGCAGGATTATGGTATTCGAAAGCAGCAAAGGAGAAAATATGATTTCACCGAGCCTTTTGAAGCATCCGAAGCATACCCATTAATCTTGGATATGTCCAATGAACTCTATCCGGAACAACAACCAAACACCACAACCAATCTGGTAAATGAGCAGGACAGCGATGATACGAAATCACACGTTGAAATCCCAGGACCTCTGTTAACACAACCCCATAGAATAGATGAAGTCCTGCAAATAAAAGAAAGCCACATCCGACGAGTGGCTCGAAAATCCAGGGCGAAACCCCTCGCTTTGACTGCGAAAGCTAGGGCAGCAAAGCGGCCATGGAAGCCCCCACCAGAAGGTGATAATGTAGAAGCTCTGAGCTGGAAAGAAGAGTGA 3843 47.44 MAKNKDDHSARPPPRPTITLPPRPSMEAFFAGGPTGLSPGPMTLVSSFFADAAVDSPSFSQLLAGAMASPIAMGFLGTGSTPNSESEFGLKQSKPMNLVVPRSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSIPASTEPLIRDPSFTLDEASLQLILPSTSDTKSHVLESTEVSHPDRKYQPPPPHASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHERPPANKRARDNSEPTGCTNSSTKLECGLQNQAGILNKSSENVQVGSSDSEEQGDTEITDDRDEDEPNPKRQNIEAGTSGAALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVHQIKPHKVVAQKHPLLKELEFGTKELHLPNVPLILMPKEMQGVQRRNTGSLECQQLNPKMALNSYGGRVHFPSLPCSAHFPIRVDRLCVASLIDAVGIWRFMGCISSKQVAKAAASPVYNHRSTTTATATATAKNGSAATMDRSSKTHSVTTLEHEKKGEEKPEDRGRDLKKSKKGSSQGEKGTLRSGPSQRYVEAEQVAAGWPSWLSSAAGEAIQGWVPLRADSFEKLEKIGQGTYSSVFRAREVETGRMVALKKVRFDNFQPESIRFMAREIMILRRLDHPNIMQLEGLITSKMSSSIYLVFEYMEHDLAGLVSCPDIEFSEAQVKCYMRQLLSAIEHCHLRGIMHRDIKASNILVNNEGILKLADFGLANIISSRNKQSLTSRVVTLWYRPPELLMGSTNYGLTVDLWSIGCVFAELHLGKPLLKGRTEVEQLHKIFKLCGSPPEEFWKKTKLPHAAMFRPQHPYESSLNEKCKDFAPSAVSLLETLLAIEPPKRGTASSALMSEYFKTKPYACDPSTLPKYPPNKEMDAKNREDALRMRANAKAKETGATQRPKKVRRNVPEFNSHKVPIKEEAEENSQPSRRNNGSNSANLSNEQGDVFQREPQKPLYDATSMTSQAATAPQRGDSAFTAPIPVSSSSGFAWVKKRKEEATSTISDGLKSQISALDPSFANFTLESTKKQIGHADIPANSSAQDYGIRKQQRRKYDFTEPFEASEAYPLILDMSNELYPEQQPNTTTNLVNEQDSDDTKSHVEIPGPLLTQPHRIDEVLQIKESHIRRVARKSRAKPLALTAKARAAKRPWKPPPEGDNVEALSWKEE 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1187701 1197353 + CmaCh15G002480.1 Cma15g00248 309398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00248 1280 Pfam WRKY DNA -binding domain 384 440 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 SMART WRKY_cls 383 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 MobiDBLite consensus disorder prediction 273 304 - -
Cma15g00248 1280 ProSiteProfiles WRKY domain profile. 378 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Cma15g00248 1280 ProSiteProfiles Protein kinase domain profile. 683 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00248 1280 MobiDBLite consensus disorder prediction 1 27 - -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 319 364 - -
Cma15g00248 1280 Pfam Protein kinase domain 683 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00248 1280 SUPERFAMILY WRKY DNA-binding domain 375 443 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 MobiDBLite consensus disorder prediction 1009 1040 - -
Cma15g00248 1280 CDD STKc_CDK9_like 683 967 - -
Cma15g00248 1280 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 624 1165 - -
Cma15g00248 1280 PANTHER CELL DIVISION PROTEIN KINASE 624 1165 - -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 1261 1280 - -
Cma15g00248 1280 SUPERFAMILY Protein kinase-like (PK-like) 677 973 IPR011009 -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 587 648 - -
Cma15g00248 1280 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Cma15g00248 1280 MobiDBLite consensus disorder prediction 1069 1093 - -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 274 288 - -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 1001 1093 - -
Cma15g00248 1280 ProSiteProfiles WRKY domain profile. 218 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 MobiDBLite consensus disorder prediction 605 636 - -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 1242 1280 - -
Cma15g00248 1280 Gene3D Phosphorylase Kinase; domain 1 670 765 - -
Cma15g00248 1280 SUPERFAMILY WRKY DNA-binding domain 221 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 MobiDBLite consensus disorder prediction 1041 1061 - -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 188 227 - -
Cma15g00248 1280 Gene3D WRKY domain 368 444 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 Gene3D WRKY domain 216 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma15g00248 1280 Gene3D Transferase(Phosphotransferase) domain 1 766 1007 - -
Cma15g00248 1280 MobiDBLite consensus disorder prediction 587 604 - -
Cma15g00248 1280 SMART serkin_6 683 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02787 Cma15g00248 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01092 Cma-Chr13:8224255 Cma15g00248 Cma-Chr15:1187701 0 dispersed
Cma14g00032 Cma-Chr14:149735 Cma15g00248 Cma-Chr15:1187701 1.11E-79 dispersed
Cma15g00248 Cma-Chr15:1187701 Cma14g01644 Cma-Chr14:12296897 0 dispersed
Cma01g00805 Cma-Chr1:4338905 Cma15g00248 Cma-Chr15:1187701 0 wgd
Cma15g00248 Cma-Chr15:1187701 Cma18g01123 Cma-Chr18:9120796 4.60E-134 wgd
Cma15g00248 Cma-Chr15:1187701 Cma04g02787 Cma-Chr4:18688997 0 wgd
Cma15g00248 Cma-Chr15:1187701 Cma04g01684 Cma-Chr4:8477538 7.35E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36381 PF00069 Pkinase 7.80E-67 CL0016 Cma TF
69131 PF00069 Pkinase 7.80E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00248 - - bhj:120091623 1075.46