Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00264 ATGGCTTCATTGGGGATCATAATCCTCTTACTGGGTGTTTCTTGGACGGTGTCGTGTGTTAATGGCGATTATGGGGGTTGGATCAACGCGCACGCCACTTTCTATGGTGGCAGTGATGCATCTGGGACAATGGGGGGGGCTTGTGGGTATGGAAATTTATACAGCCAAGGGTATGGAACCAACACTGCGGCGCTAAGCACGGCGTTGTTTGACAATGGCCTTAGCTGTGGCGCTTGCTTTGAGCTGCGCTGTGTCAACGACCCACAGTGGTGTATTCCAGGCACTATTGTCGTCACTGCCACTAACTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCACCATTTCGACCTCTCTCAGCCTATCTTCCAACACATTGCCCAATATCGTGCCGGAATTGTCCCCGTGGCTTACCGCAGGGTAAGGTGCAGAAGAAGTGGGGGGATAAGATTTACAATCAACGGCCATTCATATTTCAATTTGGTACTAGTGACCAACGTGGGGGGTGCTGGAGATATACATTCAGTAGCAATTAAGGGTTCGAGGACCCGATGGCAACCCATGTCAAGAAATTGGGGCCAAAATTGGCAGTCCAACTCTTATCTGAACGGACAGAGTCTCTCCTTTCTGGTGACAGCCAGCGACGGCCGACAAGTGCTGTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTCGGACAGACATACGTGGGCGCACAGTTCCGCTATTAA 732 52.73 MASLGIIILLLGVSWTVSCVNGDYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDIHSVAIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRQVLSYNVAPSGWSFGQTYVGAQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1261381 1262911 + CmaCh15G002640.1 Cma15g00264 309414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00264 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Cma15g00264 243 Gene3D - 13 145 IPR036908 -
Cma15g00264 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Cma15g00264 243 PANTHER EXPANSIN-A15 13 242 IPR002963 GO:0009664
Cma15g00264 243 SUPERFAMILY Barwin-like endoglucanases 26 167 IPR036908 -
Cma15g00264 243 Gene3D - 149 241 IPR036749 -
Cma15g00264 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cma15g00264 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cma15g00264 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cma15g00264 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Cma15g00264 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cma15g00264 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Cma15g00264 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Cma15g00264 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Cma15g00264 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Cma15g00264 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Cma15g00264 243 PANTHER EXPANSIN-A5 13 242 - -
Cma15g00264 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Cma15g00264 243 SMART dpbb_1 62 139 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00138 Cma-Chr11:744009 Cma15g00264 Cma-Chr15:1261381 1.78E-135 dispersed
Cma01g00793 Cma-Chr1:4282436 Cma15g00264 Cma-Chr15:1261381 1.65E-120 wgd
Cma15g00264 Cma-Chr15:1261381 Cma18g01138 Cma-Chr18:9207304 1.60E-63 wgd
Cma15g00264 Cma-Chr15:1261381 Cma04g01668 Cma-Chr4:8389926 5.19E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00264 K20628 - csv:101220358 469.544