Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00271 ATGTCTTCTGCTATCTTTTTGTTTCCATCTCTCTCTCCTGTCTGCAAGTTTCATGACCATTCAAGGAAGACCCACCACTCCAAAACAGCTAACAAAGAAAACCCATGTCCTATAATTCCTCTAGATATTAAAATCAGTAAGAGAAATCTATTGACATCCACTGGTCTCACTCTTCTAGCAGAAGGTTTCCTCGATGTCTCTGTTTCGGCAAGCGCAGAGCCAGAGAGTCCTATTGAATCCACTTCCAGTCGTTTGTCGTACTCAAGATTCTTGCAATATTTGGATGAAGGTGGAGTGAAGAAGGTTGATATTCTTGAGAACGGTACGGTCGCCATAGCTGAGATTTATAATCCTGTGTTGGACAAGATTCAGAGGGTTAAGATTCAGCTGCCAGGGCTGCCAAAAGAGTTGATAAGGAAGATGGAGCTAAAGAATGTGGATTTTGCTGCTTATCCTATGCAGGTCAATTGGGGGCTTGCAATTCTCGACTTGTTGGGAAATTTGGCCTTTCCATTGTTGTTGCTTGGTTCCTTGCTGCTTCGATCATCTTCTTCAAACTCTCCTGGAGGGCCCAGCTTGCCATTTGGACTTGGAAGGAGTAAGGCCAAATTCCAGATGGAACCCAACACAGGAGTGACATTTGATGATGTAGCTGGGATTGATGAAGCGAAGCAAGATTTCCAAGAAATTGTGGAGTTTTTGAAGATCCCCGAGAAGTTTTCAGCTGTTGGAGCAAGAATACCAAAAGGGGTTCTCTTAATTGGGCCGCCAGGAACAGGGAAGACCTTGTTGGCTAAAGCCATTGCAGGGGAAGCTGGAGTTCCTTTCTTCTCTCTCTCTGGTTCTGAGTTCATAGAGATGTTCGTTGGGGTTGGGGCTTCAAGAGTGAGAGATTTATTCAACAAAGCAAAAGCCAATTCCCCGTGCTTAGTTTTCATTGATGAGATAGATGCTGTTGGGAGACAGAGAGGCACAGGCATTGGTGGAGGAAACGATGAAAGAGAGCAGACACTGAATCAATTGCTCACTGAAATGGATGGTTTTACTGGTAATAGTGGCGTGATCGTCATCGCCGCCACCAACCGCCCTGAAATTCTCGACTCTGCTTTGCGCCGGCCAGGGAGGTTCGATAGACAAGTTACAGTGGGATTACCTGACGTGAGAGGAAGAGAAGAAATCCTGAAGGTTCACAGCAAAAACAAGAAACTGGACAGCAACATATCACTCAGCATCATTGCAATGAGGACGCCAGGCTTCAGCGGCGCCGATTTGGCTAACCTAATGAACGAAGCTGCAATTCTAGCAGGAAGAAGAGGCAGAGACAAGATCACACTGAGAGAAATCGACGATTCCATCGACAGAATTGTTGCCGGCATGGAAGGAACCAAAATGACAGATGGGAAGAGCAAAATTGTTGTGGCTTACCATGAAATTGGGCACGCCGTGTGCGCGAGCTTGACGGAGGGCCATGATCGAGTGCAGAAAGTGACACTGATTCCGAGAGGGCAAGCGAGAGGACTGACATGGTTCTTGCCCGGAGAAGACCCATCTCTGGTTTCGAAGAAGGAATTATTTGCTCGCATAGTTGGTGGGCTTGGTGGCAGAGCGGCGGAGGATGTGATCTTTGGGGAGCCGGAGATCACCACCGGTGCTGCCGGAGATCTGCTGCAGGTCACCCAAATCGCTAGACAGATGGTGACGGTGTTTGGGATGTCAGAGATAGGGCCATGGGCATTGATAGATCCAGCAACACAGAGCAGTGATGTGGTGATAAGAATGCTGGCTCGAAACTCCATGTCGGAGAAGTTAGCAGAAGACATAGATTCATCCATACGACAGGATAAATTGATTTCGTGGACAGCCATTGGCAGCAGAATACTGGGAAGGGCAGTTGATGTGGCGAAGACACTTGTCGAAGCACAGACCCACTTCCGCCAGCTGATACTGAAGATTATACTTCACGTTGCGGCTGCAGCGCAGAGCAGGCTTCCCAAAGCTAACGTTGAGGACAGATTCAAAGTCCGAAAAGGTACAGAGCTAATCGGAAATAGTCTGAGATTTGAAAGGTCGGAGTCTCGAAGCAGAATAGCTGCCAGCCCAGAGGCCGTTGATGCTGAACCTCGACGACCAGGGTTTCAGGCAGCAACGGTTTTATCTCTTCTTTTAGAGGTTTGTGCTTTTCAAAGAGCCATGGATTTAGCCCCAGCTCCCATCACTACTACAACTACGGCTAATAGCACCAAATCTCCCGACCCTGACTCCGACACTCCGACACGCTTCCCGCCGTCGTCTTCGGCCAAGTCGCTGCCTTTCACCAACGGCCTTCTCAAGCGCCACAACCACGCCCCTCAACCCTCCCTCCTTGTTTCTTACAAAGAATGTCTCAAAAACCACGCGGCCAGTTTAGGAGCTCACGCGTTGGACGGATGTGGGGAATTTATGCCTTCCCCATCTACCTCTTCCATTGATCCCACTTCGCTCAACTGCGCCGCATGCGGCTGCCACCGGAATTTCCACCGCCGTGACCCGGAGGATCCGATCTCTACTTTACCCATCAATACAGCAACCACTCATGTCATCGAGTATCAACCCCACCATCGTCATCACCCACCACCGCCCGGGACGCGGAGCCCGAATTCGGCATCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCAGCGCCGCACATGTTACTAGCGCTTTCCGCCGGGTTGTCGGCCCATCCACCGGAAATCAGACGCGCGAATACTTTAAACGCTCGGAAACGGTTCAGGACGAAATTCAGCAACGAACAGAAGGAAAAAATGCTCCATTTTGCAGAACAAGTGGGATGGAAAATGCAAAAGCGAGACGAGGGTTTGGTCCGAAATTTTTGCAATCAAGTGGGAGTTGAAAGAGGGGTTCTTAAAGTATGGATGCATAACAACAAAAACACCATGGGGAAAAAAACTGATTCCAATGACACCACCCCCACACCACCCACCACAACCACCGCCGCCGCCACCGCCGTCGTCAATATCAACAACAACGACGATGAAGACGAACCAGACGGCGGCTTGCATATGCATATTGGATCAAATGGGTCATCTTCTTCTTCTTGA 3102 49.39 MSSAIFLFPSLSPVCKFHDHSRKTHHSKTANKENPCPIIPLDIKISKRNLLTSTGLTLLAEGFLDVSVSASAEPESPIESTSSRLSYSRFLQYLDEGGVKKVDILENGTVAIAEIYNPVLDKIQRVKIQLPGLPKELIRKMELKNVDFAAYPMQVNWGLAILDLLGNLAFPLLLLGSLLLRSSSSNSPGGPSLPFGLGRSKAKFQMEPNTGVTFDDVAGIDEAKQDFQEIVEFLKIPEKFSAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALRRPGRFDRQVTVGLPDVRGREEILKVHSKNKKLDSNISLSIIAMRTPGFSGADLANLMNEAAILAGRRGRDKITLREIDDSIDRIVAGMEGTKMTDGKSKIVVAYHEIGHAVCASLTEGHDRVQKVTLIPRGQARGLTWFLPGEDPSLVSKKELFARIVGGLGGRAAEDVIFGEPEITTGAAGDLLQVTQIARQMVTVFGMSEIGPWALIDPATQSSDVVIRMLARNSMSEKLAEDIDSSIRQDKLISWTAIGSRILGRAVDVAKTLVEAQTHFRQLILKIILHVAAAAQSRLPKANVEDRFKVRKGTELIGNSLRFERSESRSRIAASPEAVDAEPRRPGFQAATVLSLLLEVCAFQRAMDLAPAPITTTTTANSTKSPDPDSDTPTRFPPSSSAKSLPFTNGLLKRHNHAPQPSLLVSYKECLKNHAASLGAHALDGCGEFMPSPSTSSIDPTSLNCAACGCHRNFHRRDPEDPISTLPINTATTHVIEYQPHHRHHPPPPGTRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPPEIRRANTLNARKRFRTKFSNEQKEKMLHFAEQVGWKMQKRDEGLVRNFCNQVGVERGVLKVWMHNNKNTMGKKTDSNDTTPTPPTTTTAAATAVVNINNNDDEDEPDGGLHMHIGSNGSSSSS 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1286159 1293863 + CmaCh15G002710.1 Cma15g00271 309421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00271 1033 Gene3D - 202 383 IPR027417 -
Cma15g00271 1033 Pfam AAA+ lid domain 406 449 IPR041569 -
Cma15g00271 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 454 IPR027417 -
Cma15g00271 1033 SUPERFAMILY Homeodomain-like 917 982 IPR009057 -
Cma15g00271 1033 Gene3D Peptidase M41 461 654 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cma15g00271 1033 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 791 842 IPR006456 -
Cma15g00271 1033 Gene3D - 385 460 - -
Cma15g00271 1033 CDD AAA 226 384 - -
Cma15g00271 1033 SMART AAA_5 247 386 IPR003593 -
Cma15g00271 1033 Pfam ZF-HD protein dimerisation region 789 843 IPR006456 -
Cma15g00271 1033 MobiDBLite consensus disorder prediction 978 997 - -
Cma15g00271 1033 Pfam ATPase family associated with various cellular activities (AAA) 251 383 IPR003959 GO:0005524|GO:0016887
Cma15g00271 1033 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 166 613 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cma15g00271 1033 Gene3D - 911 982 - -
Cma15g00271 1033 MobiDBLite consensus disorder prediction 738 778 - -
Cma15g00271 1033 Pfam Peptidase family M41 464 613 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cma15g00271 1033 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Cma15g00271 1033 PANTHER METALLOPROTEASE M41 FTSH 3 639 - -
Cma15g00271 1033 MobiDBLite consensus disorder prediction 863 889 - -
Cma15g00271 1033 SUPERFAMILY FtsH protease domain-like 466 613 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cma15g00271 1033 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 6, CHLOROPLASTIC 3 639 - -
Cma15g00271 1033 MobiDBLite consensus disorder prediction 738 771 - -
Cma15g00271 1033 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 693 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cma15g00271 1033 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 921 978 IPR006455 -
Cma15g00271 1033 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 791 842 IPR006456 -
Cma15g00271 1033 MobiDBLite consensus disorder prediction 1006 1033 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01908 Cma-Chr11:12616469 Cma15g00271 Cma-Chr15:1286159 0 dispersed
Cma15g00271 Cma-Chr15:1286159 Cma19g01004 Cma-Chr19:8667306 0 dispersed
Cma11g01027 Cma-Chr11:5597756 Cma15g00271 Cma-Chr15:1286159 2.53E-84 wgd
Cma14g00594 Cma-Chr14:2947003 Cma15g00271 Cma-Chr15:1286159 1.07E-83 wgd
Cma15g00271 Cma-Chr15:1286159 Cma18g01152 Cma-Chr18:9258379 1.31E-55 wgd
Cma15g00271 Cma-Chr15:1286159 Cma04g02764 Cma-Chr4:18595504 6.53E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36384 PF01434 Peptidase_M41 1.40E-50 CL0126 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00271 K03798 - csv:101213306 1040.02