Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00277 ATGGCGGAACCAGTTGCAGAGCCCAAGGCATTACCCGAACCTGAAAAGAAAAAGGAACACACCCTTCCTTTCTTCCAACTCTTCTCTTTTGCAGACAAATACGACTGCTTTCTTATGATCCTCGGCACTTTCGGCGCCATTGTCCACGGCTCTTCCATGCCCGTTTTCTTCCTCCTCTTCGGCCAAATGGTTAATGGCTTCGGCAAAAACCAATCCGATTTTCACAAAATGACAGCCGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTGTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGCACGTTGAGAAAGAAGTATTTAGAGGCTGTTTTGAAACAGGACGTTGGATTCTTCGACACTGATGCCAGAACAGGGGATGTTGTTTTCAGCGTCTCAACAGACACTCTTCTTGTTCAAGATGCTATCAGTGAGAAGGTGGGGAACTTCATTCACTATCTCTCGACGTTCTTGGCTGGTTTGGTGGTGGGTTTTGTGTCAGCATGGCGACTAGCACTTCTGAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGTGGTTTATATGCTTATACTCTTACTGGACTCACTTCCAAGAGTCGGGAATCCTATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGGGAAAGCAAAGCCCTGAATTCCTATTCAGATGCGATTCATAACACGTTGAAAATTGGATATAAGGCTGGAATGGCCAAGGGGTTGGGCTTAGGTTGTACCTATGGCATTGCTTGTATGTCTTGGGCACTCGTCTTCTGGTATGCTGGAGTCTTCATCCGAAACGGCCAGAGCGACGGCGGCAAAGCCTTCACTGCTATATTCTCCGCCATCGTTGGTGGCATGAGTTTGGGGCAGTCATTCTCCAATTTGGGCGCATTCAGTAAAGGAAAATCAGCAGGGTATAAATTGATGGAGATTATCAAACAGAGGCCTTCGATCATTCAAGACCCATTTGATGGGAAGTGTTTGGGTGAAATTAAAGGCAATATTGAGTTCAAAGATGTCACCTTTAGCTACCCATCCAGACCGGACGTGATGATCTTCAGGGATTTCTCCATTTTCTTCCCTGCCGGGAAGACTGTTGCCGTCGTCGGTGGCAGCGGTTCTGGGAAAAGCACCGTCGTCTCTCTCATTGAAAGATTCTACGATCCCAATCAAGGGCATGTTCTGTTGGACAATGTGGACATTAAGACGCTGCAATTGAAATGGCTACGTGATCAAATCGGTTTAGTGAATCAGGAACCGGCACTGTTTGCAACCACCATATACGAAAACATTCTCTACGGAAAATCCGCTGCCACGACGGCGGAGGTGGAAGCCGCCGCGGCTGCAGCCAACGCTCATAGCTTCATCACATTGCTCCCCAATGGCTACGACACCCAAGTCGGCGAAAGAGGATTACAACTCTCCGGCGGCCAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACCAGCGCCCTCGATGCAGGCTCTGAAAGCATTGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACGGTTGTAGTCGCACATCGATTATCAACCATAAGAAATGTGGACTCAATTGCAGTGATACAACAGGGGCAGGTCGTCGAAACAGGAACCCACGAAGAACTAATCGCCAAATCCGGTGCTTATTCCTCGTTAATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCGTCACGGCTGAGCCATTCGTTATCGACAAAATCATTAAGCCTCCGCTCCGGCAGCCTCAGGAATTTGAGCTATTCGTATAGCACCGGCGCCGACGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGACCGGAAAAATCCAGCCCCAGATGGCTATTTCATTCGTCTTCTTAAACTCAACGGCCCCGAATGGCCGTATTTGATAATGGGCGCTGTTGGGTCTATTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTGATGAGTAACATGATCGAGGTCTTCTATTACAAAAACTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTGGTGGCATATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAAAATCTCACTACCAGAGTCAGAAGAATGATGCTCGCAGCGATATTGAGGGAAGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAGACTGGCCACTGATGCAGCTGATGTAAAATCCGCCATTGCTGAAAGAATATCAGTGATTCTGCAAAACATGACTTCACTCTTCACTTCGTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTGCTAATCCTTGCAGCCTTCCCTCTGCTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGATACTGCAAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTTCGCAATGAGCTTCGTGTCCCACAGAAACAGAGCCTCCGCCGGAGCCAAACGGCGGGTGTTCTTTTCGGCATCTCGCAGCTCGCTCTGTATGCCTCTGAAGCTCTGGTTTTATGGTATGGTGTTCATTTGGTCAGCAATGGCGGATCGACATTCTCCAAAGTGATTAAAGTCTTTGTTGTCTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTAGGGGGGGTGAATCAATTGGTTCTGTTTTCTCGATTCTCGGTCGCCCGACAATGATCGACCCTGATGATCCTGAGGCGGAGGTTGTTGAGACGCTTCGTGGGGAAATTGAGCTTCGACATGTCGATTTCGCGTACCCGTCTCGACCTGATGTCATGGTGTTCAAGGATTTTAATCTTAGGATCAGGGCTGGTAAGAGCCAGGCATTGGTTGGAGCAAGTGGATCAGGGAAGAGCTCTGTGATTGCGTTGATTGAGAGATTCTACGATCCGATCGCCGGGAAAGTTATGATCGACGGGAAGGACATTCGACGTCTGAACTTGCAATCGTTGAGGCTAAAAATTGGGTTGGTACAGCAAGAGCCAGCCCTGTTTGCAGCCAGCATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACAGAGGCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTAAGTGGACTGCCTGATGGCTACAAGACACCAGTGGGGGAAAGGGGCGTTCAGCTATCTGGTGGCCAAAAACAACGCATTGCTATTGCCAGGGCAGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCCACCAGTGCCCTTGACGCTGAGTCCGAGTGTGTGCTGCAAGAGGCTCTCGAAAGGCTCATGAGAGGTCGAACCACAGTAGTCGTGGCACATCGCCTGTCAACAATCAGGGGCGTCGACAGCATCGGCGTGGTCCAAGATGGACGCATTGTTGAGCAAGGCAGCCATAGCGAGCTGCTAAGCCGACCCGAGGGAGCTTACTCAAGGCTGTTGCAGCTGCAACACCAACACATATGA 3753 48.33 MAEPVAEPKALPEPEKKKEHTLPFFQLFSFADKYDCFLMILGTFGAIVHGSSMPVFFLLFGQMVNGFGKNQSDFHKMTAEVSKYALYFVYLGLIVCVSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIHNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKSAGYKLMEIIKQRPSIIQDPFDGKCLGEIKGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGHVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKSAATTAEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYLIMGAVGSILSGFISPTFAIVMSNMIEVFYYKNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILREEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRNELRVPQKQSLRRSQTAGVLFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILGRPTMIDPDDPEAEVVETLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGKSQALVGASGSGKSSVIALIERFYDPIAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELLSRPEGAYSRLLQLQHQHI 1250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1315054 1321049 + CmaCh15G002770.1 Cma15g00277 309427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00277 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Cma15g00277 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Cma15g00277 1250 Pfam ABC transporter transmembrane region 39 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma15g00277 1250 Pfam ABC transporter transmembrane region 685 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma15g00277 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Cma15g00277 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma15g00277 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 600 IPR027417 -
Cma15g00277 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Cma15g00277 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Cma15g00277 1250 SUPERFAMILY ABC transporter transmembrane region 673 993 IPR036640 GO:0005524|GO:0016021
Cma15g00277 1250 SUPERFAMILY ABC transporter transmembrane region 27 349 IPR036640 GO:0005524|GO:0016021
Cma15g00277 1250 SMART AAA_5 1035 1207 IPR003593 -
Cma15g00277 1250 SMART AAA_5 390 582 IPR003593 -
Cma15g00277 1250 Gene3D ABC transporter type 1, transmembrane domain 26 977 IPR036640 GO:0005524|GO:0016021
Cma15g00277 1250 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1248 - -
Cma15g00277 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Cma15g00277 1250 Gene3D - 353 601 IPR027417 -
Cma15g00277 1250 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1248 IPR039421 -
Cma15g00277 1250 Gene3D - 998 1250 IPR027417 -
Cma15g00277 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524
Cma15g00277 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Cma15g00277 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Cma15g00277 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524
Cma15g00277 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Cma15g00277 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00393 Cma-Chr6:1818620 Cma15g00277 Cma-Chr15:1315054 0 dispersed
Cma09g00095 Cma-Chr9:418372 Cma15g00277 Cma-Chr15:1315054 0 dispersed
Cma14g00224 Cma-Chr14:971717 Cma15g00277 Cma-Chr15:1315054 0 dispersed
Cma15g00277 Cma-Chr15:1315054 Cma19g00223 Cma-Chr19:1529429 0 dispersed
Cma15g00306 Cma-Chr15:1418959 Cma15g00277 Cma-Chr15:1315054 0 dispersed
Cma17g00669 Cma-Chr17:5597092 Cma15g00277 Cma-Chr15:1315054 0 dispersed
Cma20g00509 Cma-Chr20:2482090 Cma15g00277 Cma-Chr15:1315054 8.00E-07 dispersed
Cma20g00963 Cma-Chr20:4876686 Cma15g00277 Cma-Chr15:1315054 0 transposed
Cma15g00277 Cma-Chr15:1315054 Cma04g02761 Cma-Chr4:18563539 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00277 K05658 - csv:101212585 2224.51