Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00281 ATGGCTTCCCCTCACCATTCCCATAGCTTCCTCTTCCAATCCCGCCCCGCCGATCACCACGAATACCTTCCCTCCGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTCCACGATGGGGTCATCCCGGTGATGATGAAGAGATCGATGTCGTTTTCGGGCGTCGAAAATGGATGCGAGGAAGTGAACGGGGACGAGGGGCTGTCGGACGATGGATTGGCGTTGGGAGAGAAGAAGAAGCGCCTCAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGCTGGGGAATAAGCTTGAGCCTGAGAGAAAGATTCAACTGGCCAAAGCCTTGGGGTTGCAGCCAAGACAGGTTGCTATTTGGTTCCAGAACAGAAGGGCCAGATGGAAGACCAAGCAGCTGGAAAGAGATTATGAGGTCTTGAAGAAACATTTTGAATCTCTTAAGGCTGACAATGATGTACTCCAAGCTCAAAATTCCAAACTCCATGCACAGTTATTAGCATTAAAAACCAAGGACACCGGGGAGGTGGCGGGCGGCGGGGCCACCATGAACCTAAAGAAAGAAAATGAACGGTGTTGGAGCAGCGACAACAGTTGTGACATCAACCTGGACATCTCAAAGACACAAGCAGCAATAAACGGCGGAGAAGGTGGAAGAGCATGTTGTGAACCAGGAATCAAAGACCTTTTCCCATCGGCAGCGTTCCGATCGGGTGCCATAACGCAGCTGATTCAACGCGGGTCTTCCAGGTCAACGGTTGACCATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGTATTGAAGAACAACAACAAACTGCAGCAGCGGCAGCTGGGTTTTGGCCATGGGGTTCGGATCAAAGCTCCCATTTTAATTAA 906 50.33 MASPHHSHSFLFQSRPADHHEYLPSASFNAIPSCPPHLYFHDGVIPVMMKRSMSFSGVENGCEEVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQVAIWFQNRRARWKTKQLERDYEVLKKHFESLKADNDVLQAQNSKLHAQLLALKTKDTGEVAGGGATMNLKKENERCWSSDNSCDINLDISKTQAAINGGEGGRACCEPGIKDLFPSAAFRSGAITQLIQRGSSRSTVDHPQVIQEESFSQMFNGIEEQQQTAAAAAGFWPWGSDQSSHFN 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1338846 1340335 + CmaCh15G002810.1 Cma15g00281 309431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00281 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 301 IPR045224 GO:0003700
Cma15g00281 301 SMART HOX_1 79 140 IPR001356 GO:0003677
Cma15g00281 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 301 - -
Cma15g00281 301 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cma15g00281 301 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Cma15g00281 301 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Cma15g00281 301 Coils Coil 135 169 - -
Cma15g00281 301 CDD homeodomain 81 137 IPR001356 GO:0003677
Cma15g00281 301 Gene3D - 77 151 - -
Cma15g00281 301 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Cma15g00281 301 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Cma15g00281 301 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677
Cma15g00281 301 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02756 Cma15g00281 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00281 Cma-Chr15:1338846 Cma18g01164 Cma-Chr18:9324568 9.46E-75 dispersed
Cma13g00928 Cma-Chr13:7361934 Cma15g00281 Cma-Chr15:1338846 7.28E-39 wgd
Cma15g00281 Cma-Chr15:1338846 Cma18g00128 Cma-Chr18:627359 3.12E-36 wgd
Cma15g00281 Cma-Chr15:1338846 Cma04g02756 Cma-Chr4:18528070 0 wgd
Cma15g00281 Cma-Chr15:1338846 Cma04g01643 Cma-Chr4:8287930 6.68E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36387 PF00046 Homeodomain 1.30E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00281 K09338 - csv:101212093 519.235