Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00284 ATGTTAAGGGCATTCACTTGGTATGGAGCCACAGTTGAAATGGATGGTGCTACTGAAACTGATTATACAGCAGATGAGGTAAGATATCTGGGTTGTGAGGCATTGAAATCTGTTTTTAAGAGATTTGGGGATATGGGTTTGGCACCAAATGACTCCAAAGTCGAGACATGGATTGAGGGCAAGTCAAGAATAGCTACCGAGAAGAAGAAGAAGGAGAATGAGCCGGAGGAGGAGACCGGATGTTGGGTTAAGTTGAAGTTCATAGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATACTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGCGCCACCAGCACCCATTGCGATAGTAAATCTAGAGTTGACGAGAAAAGAGATAGCCTGGTTACTGCATTGGGGTTATCAGCAACAACTGATAATGCTGAAAGTAGTTCCTCCACGCCCAAGTTTAGTGCTGAGCTGAAGGTTGCTTCTAGGCTTCGTAAGTTCACTTTCAACGAGCTTAAGTTAGCCACAAGAAATTTTCGACCTGAGAGCCTTCTGGGCGAGGGAGGTTTTGGCTGTGTTTTCAAAGGATGGATTGAGGAGAATGGGACTGCTCCTGCTAAACCTGGAACAGGGCTTACTGTTGCAGTCAAGACTCTTAACCATGATGGTCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTTGGTGACCTCAACCATTCCAATCTTGTAAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTGTTAGTTTATGAGTTCATGCCTCGTGGGAGTTTGGAGAACCACCTCTTCAGAAAAGGGCCCTTGCCACTTCCTTGGTCCATGAGAATGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGACTTTAAAACGTCTAATATTCTATTAGATGCGGATTACAACGCTAAACTCTCAGATTTTGGACTTGCAAAAGATGGTCCTGAGGGTGATAAAACTCATGTTTCAACTCGGGTTATGGGAACATATGGTTATGCAGCTCCAGAATATGTGATGACTGGCCATTTGACGTCAAAAAGCGATGTCTATAGCTTTGGAGTTGTCTTGCTTGAAATGCTAACGGGTCGAAGATCGATGGATAAGAATAGACCGAATGGGGAGCACAACCTTGTTGAATGGTCTAGACCCCTGCTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCCCGCCTCGAATGTCACTTTTCAATCAAAGGTGCACAAAAAGCAGCAGAGCTTGCAGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTGTGATGAGTGAAGTTGTTGAAACTTTAAAACCTTTGCCAAACCTCAAGGACATGGCGAGTTCTTCCTATTACTTCCAAACCATGCAAGCTGACCGTGCCAGGGCCAACCCGAATGCTAAAGGTGTCGTCCGCACGCAGTCAATGTTTGTGTCAAGGAATGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGTCCTCAGGCTTCTCCGTATAATTATCCTCATCACTCACCAAAACCTGACAGGAAACAACCTTAA 1608 44.78 MLRAFTWYGATVEMDGATETDYTADEVRYLGCEALKSVFKRFGDMGLAPNDSKVETWIEGKSRIATEKKKKENEPEEETGCWVKLKFIGSCIPSRSKVDTSLSGSKVDSFISATSTHCDSKSRVDEKRDSLVTALGLSATTDNAESSSSTPKFSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSMRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWSRPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPVMSEVVETLKPLPNLKDMASSSYYFQTMQADRARANPNAKGVVRTQSMFVSRNGQHIRSLSSPNGPQASPYNYPHHSPKPDRKQP 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1345263 1352167 - CmaCh15G002840.1 Cma15g00284 309434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00284 535 CDD STKc_IRAK 184 462 - -
Cma15g00284 535 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 111 526 - -
Cma15g00284 535 MobiDBLite consensus disorder prediction 504 535 - -
Cma15g00284 535 ProSiteProfiles Protein kinase domain profile. 178 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma15g00284 535 ProSitePatterns Protein kinases ATP-binding region signature. 184 216 IPR017441 GO:0005524
Cma15g00284 535 Gene3D Transferase(Phosphotransferase) domain 1 264 482 - -
Cma15g00284 535 MobiDBLite consensus disorder prediction 504 521 - -
Cma15g00284 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cma15g00284 535 PANTHER OS01G0588500 PROTEIN-RELATED 111 526 - -
Cma15g00284 535 Gene3D Phosphorylase Kinase; domain 1 152 263 - -
Cma15g00284 535 SUPERFAMILY Protein kinase-like (PK-like) 155 459 IPR011009 -
Cma15g00284 535 Pfam Protein tyrosine and serine/threonine kinase 182 459 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02754 Cma15g00284 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02754 Cma-Chr4:18515247 Cma15g00284 Cma-Chr15:1345263 0 dispersed
Cma07g01222 Cma-Chr7:6712720 Cma15g00284 Cma-Chr15:1345263 2.65E-64 dispersed
Cma12g01192 Cma-Chr12:9352555 Cma15g00284 Cma-Chr15:1345263 1.48E-176 dispersed
Cma15g00284 Cma-Chr15:1345263 Cma02g00799 Cma-Chr2:4738705 2.17E-163 dispersed
Cma15g00284 Cma-Chr15:1345263 Cma18g01174 Cma-Chr18:9397046 0 wgd
Cma15g00284 Cma-Chr15:1345263 Cma04g02753 Cma-Chr4:18510108 1.41E-07 wgd
Cma15g00284 Cma-Chr15:1345263 Cma04g01633 Cma-Chr4:8233692 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69132 PF07714 PK_Tyr_Ser-Thr 5.60E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00284 - - csv:101211851 934.865