Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma15g00312 ATGGCCGGTGGCATCTTCAATCGTCTGTTTTACTATCTATTTTTTGTGTATTTGGCATCTTCTTTTGCTGGATTGCAGGTTTTTGTGCGGGGTCGGTTGCTTCTAAGTTCTAAACCCCACCCGGATGATGCTGCGGCCACTGCTCGTTGGTTGGTTTCTCAGAATTCATGGGGAATCTTGAGGAATGTGGTTTCGTTTAGTGATGGGCCACCGGGCAAAGGTCGAGGCACGCCATATTTCTACTTAACAACTCTTGACCCAACTGCAAGATATGCAATCTCAGATGAGAGGGCTTCATTTACGCTAAGTGAGTACCCTATTGGCACTTGTGGCAAGATAGATCCCGAAAACCCGACTTGCGCGAAGATTACGTTGATCGGGAAGCTGAGGCAGGTGGATCCTAATTCCAAAGAAGTAGAGTTTGCTAAAACTTCCTTGTTCTCAAAGCATGCAGAGATGAAGAAGTGGCCTAAGGATCACGACTTTCGGTTCTACAAATTAGTAATAGAGAACATATTCTTGATCGATTGGTTCGGTGGGCCGAAGCCACTTACAGTCGATCAATATCTACATTTCAAATTAAAAAACTATATACAAATCCAGAGATTCTTCTTCTTCCTCCGATTCTACAGATTTTTTCTCTTCCTCGTTTTTCGCGGCTTTGTCCTCATGATTCCACAAGCTTCCTCGTTCAATATCGCCGTTCCACTCTCCGGTTCCCCCCTCGGGCACTCCCGTCACCGACATGTCGTGCGAGCTCAAGCGGAACCGTCCGAGAAGTCGGTCGAAATAATGAGGAAATTCTCGGAGCATGTTAGAGAAGCTCATGTTAGATCTAAACAGGGACTAGCAGATCACAAAGATACATTGGGTGCACCACTTTGTCCTTGCCGGCATTATGATGACAAACCTGCTGAAGTTGCACAAGGTTTTTGGAACTGTCCATGTGTTCCAATGAGAGAGAGGAAAGAGTGTCACTGCATGCTTTTCCTGACTCCAGAGAACGACTTTGCGGGCACTGATCAGGTCGAGGCTTCAATTGTTTCACAGGTTTCGTTCCTGGAGATGTCGAGGCCCCAAGTCACCATCACTCTGGGGCGCTCTGGTCAGATGGTAAAGAGAGGAGGTTCTGACTTCGCTCAATCGAATATTGATTCTGGACCAGTGCCAAGAAGAAAACGATATATTGAGAGATCAGCAGATAATGCAGAGGATTTGTTCTCATCCACGAATAAGCGGATGAGAGTTAGATCCCCAGATGGGATCATGAAGAGCTCCATGGGACTTTCACCTCCTAGATACAATGATGAGTTTAGGAGGATCTCATCTATGAGGGAAGCTGATCGTTCTAGAGATGAATGGTTTTTTAGGAACAGCGTTGCTGATAGTTATAGGTCTGTAGACTCTGCACCTGCGAAAATGAAAGCCACCCTCCCTGTGTCTGGCAAGGCAGTTAAGGATCTCACAGCAATAAGTGGCAGCATGCAGAGAAGTTCCGCAATGGGAGAGGGTACTCTTTCTGTTGCTGGCTTGTTGAATTCGCTTGGTTTGGGGAAATATGTCATTCATTTTCAGGCAGAAGAAATTGATATGACAGCTTTGAGACAGATGGGAGACAGGGATCTTAAAGAGTTGGGGATACCCATGAGCATAGACCTCTCTGCCTTACCAAAGCTGTGCTTAGCATACATGGATAAAACTTTGAACCATTTACTAATTGAGAATGGAGTCGACGGATACCCAATTCATTCGGGAAGCAGAACAGGCTACGAAGATGATCATCACTACGCTCCTGATTCTATGCATGCTACTTTAGCATTTTGGAAGAAGGGAATTGTGTCTGTCTCACCATCAGACTGGCAAGTCAAAAAGGAGGAGATCAAGAAGATCAACGAGTTGATGCTTCTACTCTCATCTGGAGAAAGCAGAGGAGGAGATTTTCTTCTTCACTTGGGGATTTGCTTACCTTTACTCTTTCTCGATTCTGCTCATATTCTGAAACCACAAATTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTTCATACCTCCGCGGACTTGGTCCACTGGACACCGGATTTTCACCAGCATTCTCAGCCGCTGTTCCGTTATCTGACTTCGTTTCACTGCACAAATCATGGAGCTTCAGGAACATTTCCTTGAGTCCTTTGATTGACGAGCATAGAAACTACCTTCTTTGTATTGTTATAAGGGGTTTCTTCCTTTTTCAGAGATTGAAATCTGAATCTCACAATCCAAAAATGGAATTTCAGGAGGGTTTGATGAAGTTCATGATCCATAGACACATCAAACACAACTGGGTTTTGGAGAAGAATTCTCCACCGGTTGCAGTTTCAGAGATAACCAGTAGTCCTAGACGGAAATGGCGGATCTTCAATCGGTCTTCTTCTTCCCCATTTCCTTCGAAACCTCCCCAATCGAAGGAAATACCTAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGATCCTGTAATTGTCTCCTCTGGTCACACTTTCGAAGCCGCCTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTGTTAGATGGTTCCAACCCGGATTTCTCCTCTGTTATCCCAAATCTGGCTCTCAAATCCACTATTCTCAATTGGTGCAAGAATTCCTCTTCTGAATCCCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTCGTTCGTCAATTCATGGCGGCCCACACCAAAAGCGATGAGGAATTGATTCAAGGGATTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACCGAAGTCACTCGTCGGACCTCTCATTTCCACTCGAGCTCCGATGAATCTGTAGGTGCCGCCGTTCCAACTCTGCCCCTTCCTCTCGCGACAAGGCCGAGTTGTTGTTCTTCATCTTCTTCCTCTGACATCGAGGTAATCAGTGATCTGAACTTGCCCGAGGAAGAAGAGATTATCGCGAAGCTGAAAAGCTCTCAGGTTATTGAGATTGAAGAGGCTGTGACTGCGCTGAGAAAAATCACTAGAACTCGAGAGGATTCCAGGGTTCATCTTTGTTCTCCTCTGATTCTCTCTGCTCTGCGATCTCTCATCGTCTCGAGGTACACTGGCGTTCAGGTGAATTCAGTTGCAGCGCTTGTAAATCTGTCTTTAGAGAATTTGAACAAGGTCAAGATTGTAAGGTCGGGGATTCTCCCCAATTTGATCGATGTTCTGAAAGGGGGTTCACCGGAGGTTCAAGAACATGCCGCCGGCGCCATTTTCAGCTTAGCTCTCGAAGACGACAACAAGACCGCGATCGGCGTTTTGGGTGCTCTGCCGCCATTGATACGGCTATTGGTATCAGATTCAGAGCAGACTCGGCACGACTCGGCTCTTGCTCTTTATCACTTATCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGGTCGGTGCCGGTCTTTCTCGGGATGGTGAAATCCGGCCATATGGCCGGCCGTATTTTACTGATATTGTGTAATTTAGCTGCTTGTTTCGAGGGCCGGGCGGCGTTGTTGGACTCCGGTGCAGTGGAGTGCTTGGTGGGGATGATGAGGGAGAACGAGCTGGACACTGAGTCGACTCGGGAGAGTTGTGTGGCTGTCCTGTTCGGACTGAGTTACGGCGGTTTGAGGTTTAAGGGTCTGGCAAAAACCGCCGGAGCAATGGAGGTGTTCATGGCGGTAGAGAAAAATGGAAGCGAGAGATCAAAAGAAAAGGTGAAGAGAATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAACTGCTGGACTCGGGTTGTTTTGGCAGCCGGACTCGGTGTCGAATCGGTGCCGGAATGGACATATCCACCGCGAACTCGTCGGAGTTCTGA 3930 47.12 MAGGIFNRLFYYLFFVYLASSFAGLQVFVRGRLLLSSKPHPDDAAATARWLVSQNSWGILRNVVSFSDGPPGKGRGTPYFYLTTLDPTARYAISDERASFTLSEYPIGTCGKIDPENPTCAKITLIGKLRQVDPNSKEVEFAKTSLFSKHAEMKKWPKDHDFRFYKLVIENIFLIDWFGGPKPLTVDQYLHFKLKNYIQIQRFFFFLRFYRFFLFLVFRGFVLMIPQASSFNIAVPLSGSPLGHSRHRHVVRAQAEPSEKSVEIMRKFSEHVREAHVRSKQGLADHKDTLGAPLCPCRHYDDKPAEVAQGFWNCPCVPMRERKECHCMLFLTPENDFAGTDQVEASIVSQVSFLEMSRPQVTITLGRSGQMVKRGGSDFAQSNIDSGPVPRRKRYIERSADNAEDLFSSTNKRMRVRSPDGIMKSSMGLSPPRYNDEFRRISSMREADRSRDEWFFRNSVADSYRSVDSAPAKMKATLPVSGKAVKDLTAISGSMQRSSAMGEGTLSVAGLLNSLGLGKYVIHFQAEEIDMTALRQMGDRDLKELGIPMSIDLSALPKLCLAYMDKTLNHLLIENGVDGYPIHSGSRTGYEDDHHYAPDSMHATLAFWKKGIVSVSPSDWQVKKEEIKKINELMLLLSSGESRGGDFLLHLGICLPLLFLDSAHILKPQILSLLSLSLSLSLSCSYLRGLGPLDTGFSPAFSAAVPLSDFVSLHKSWSFRNISLSPLIDEHRNYLLCIVIRGFFLFQRLKSESHNPKMEFQEGLMKFMIHRHIKHNWVLEKNSPPVAVSEITSSPRRKWRIFNRSSSSPFPSKPPQSKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGSNPDFSSVIPNLALKSTILNWCKNSSSESPKPLDFSSAEKLVRQFMAAHTKSDEELIQGIAENPVVRFNHAATEVTRRTSHFHSSSDESVGAAVPTLPLPLATRPSCCSSSSSSDIEVISDLNLPEEEEIIAKLKSSQVIEIEEAVTALRKITRTREDSRVHLCSPLILSALRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDDNKTAIGVLGALPPLIRLLVSDSEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSGHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMMRENELDTESTRESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRIGAGMDISTANSSEF 1309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1439680 1454635 + CmaCh15G003120.1 Cma15g00312 309462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma15g00312 1309 Gene3D - 42 194 IPR012349 -
Cma15g00312 1309 Pfam Armadillo/beta-catenin-like repeat 1065 1101 IPR000225 GO:0005515
Cma15g00312 1309 Pfam Armadillo/beta-catenin-like repeat 1104 1142 IPR000225 GO:0005515
Cma15g00312 1309 CDD RING-Ubox 825 868 - -
Cma15g00312 1309 PANTHER U BOX DOMAIN-CONTAINING 796 1298 - -
Cma15g00312 1309 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 796 1298 - -
Cma15g00312 1309 SMART arm_5 1021 1061 IPR000225 GO:0005515
Cma15g00312 1309 SMART arm_5 1183 1226 IPR000225 GO:0005515
Cma15g00312 1309 SMART arm_5 1103 1143 IPR000225 GO:0005515
Cma15g00312 1309 SMART arm_5 1062 1102 IPR000225 GO:0005515
Cma15g00312 1309 Gene3D - 990 1265 IPR011989 -
Cma15g00312 1309 Gene3D - 506 552 IPR013761 -
Cma15g00312 1309 SUPERFAMILY Ferredoxin thioredoxin reductase (FTR), catalytic beta chain 260 342 IPR036644 GO:0016730
Cma15g00312 1309 SMART Ubox_2 823 886 IPR003613 GO:0004842|GO:0016567
Cma15g00312 1309 Pfam Ferredoxin thioredoxin reductase catalytic beta chain 280 342 IPR004209 GO:0016730
Cma15g00312 1309 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1114 1156 IPR000225 GO:0005515
Cma15g00312 1309 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1073 1110 IPR000225 GO:0005515
Cma15g00312 1309 Pfam Pyridoxamine 5'-phosphate oxidase 40 190 - -
Cma15g00312 1309 SUPERFAMILY ARM repeat 995 1253 IPR016024 -
Cma15g00312 1309 Pfam SAM domain (Sterile alpha motif) 507 547 IPR001660 GO:0005515
Cma15g00312 1309 ProSiteProfiles U-box domain profile. 819 893 IPR003613 GO:0004842|GO:0016567
Cma15g00312 1309 SUPERFAMILY FMN-binding split barrel 42 192 - -
Cma15g00312 1309 SUPERFAMILY RING/U-box 815 892 - -
Cma15g00312 1309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 819 892 IPR013083 -
Cma15g00312 1309 SUPERFAMILY SAM/Pointed domain 506 549 IPR013761 -
Cma15g00312 1309 Gene3D Ferredoxin thioredoxin reductase catalytic beta subunit 252 353 IPR036644 GO:0016730
Cma15g00312 1309 Pfam U-box domain 820 890 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g02726 Cma15g00312 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00909 Cma-Chr5:7207998 Cma15g00312 Cma-Chr15:1439680 2.11E-17 dispersed
Cma10g00149 Cma-Chr10:682222 Cma15g00312 Cma-Chr15:1439680 1.78E-160 dispersed
Cma15g00312 Cma-Chr15:1439680 Cma20g00982 Cma-Chr20:5237544 8.22E-09 dispersed
Cma17g01270 Cma-Chr17:8616596 Cma15g00312 Cma-Chr15:1439680 5.98E-12 dispersed
Cma04g02727 Cma-Chr4:18368692 Cma15g00312 Cma-Chr15:1439680 9.85E-59 transposed
Cma13g00905 Cma-Chr13:7247896 Cma15g00312 Cma-Chr15:1439680 4.24E-141 wgd
Cma15g00312 Cma-Chr15:1439680 Cma18g00146 Cma-Chr18:754216 2.41E-139 wgd
Cma15g00312 Cma-Chr15:1439680 Cma04g02726 Cma-Chr4:18365399 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma15g00312 - - cmax:111489531 1056.97